| Protein: | gi|24346905, gi|... |
| Organism: | Shewanella oneidensis MR-1 |
| Length: | 1025 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24346905, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
431.0 | [0..4] | [1023..1] |
|
|
428.0 | [0..1] | [1023..1] |
|
|
426.0 | [0..4] | [1023..1] |
|
|
426.0 | [0..4] | [1024..1] |
|
|
424.0 | [0..1] | [1023..1] |
|
|
424.0 | [0..1] | [1022..1] |
|
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417.0 | [0..4] | [1023..1] |
|
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416.0 | [0..4] | [1018..1] |
|
|
412.0 | [0..1] | [1022..1] |
|
|
408.0 | [0..30] | [1021..885] |
|
Region A: Residues: [1-297] |
1 11 21 31 41 51
| | | | | |
1 MAPLSLSRRS LTGRLMLAFS VLGLLLLLLV SLGSLSLHWL KQADRYLYEE SLPASQAARQ 60
61 LVQASNALSD GVTQLGQVED ERQREFIGRK LNLESATMLN SIKVLLALDV NEDNHLPVLA 120
121 GQIIEQLTLL GQSVGQRITL GDELQRRARE LSVAAAHASE LLQSELAVVD SAILAKLSQA 180
181 YPDMAGNKRS GQLLDDVIER ELDIQEQLNR ALKLVHQIAL LSQLFEVSEL QSELQLSVPR 240
241 LLATFASTLP SHPVAHINQQ KGTAIEQASE AVTELSAPEV GIDLMALTTV SELIRDP
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [298-479] |
1 11 21 31 41 51
| | | | | |
1 GRLNALKAEL VTLKHTPKII KLQRDLSQSL QRQQRQQQAL AEKLYSLNTL VDSALNQQQQ 60
61 RAELARSDYL MQLSYARFGL LATGMLMFVI MGWVIYRVIY RGIALRLNQA TQAMSRLSLG 120
121 DINVSLDARG DDELTAMANA IEAFKRKTAH NLKLQADLRQ VADELTEHKK ALEQTVATRT 180
181 QE
|
| Detection Method: | |
| Confidence: | 3.33 |
| Match: | 2f95B |
| Description: | M intermediate structure of sensory rhodopsin II/transducer complex in combination with the ground state structure |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [480-730] |
1 11 21 31 41 51
| | | | | |
1 LAETNLRLDA EAKGHAKARV VAEEASQAKS QFLATMSHEI RTPLNGLLGT LTLLGQSQLP 60
61 PAQQQMLALS QYSGTLLQTV LSDILDFSRL EQGNLTNEPR PTDINALLDE VLAIMVAGAN 120
121 LAGLSLRLNR PQLPACINID GPKLRQVLFN LIGNGIKFTS EGSVSLNVSL QGGRLAFVVA 180
181 DTGVGIAPEV REQLFIPYST LPNQGRSRGT GLGLAICKQL VELMDANGRG IWVKSEPGKG 240
241 SEFGFELCFT Q
|
| Detection Method: | |
| Confidence: | 46.0 |
| Match: | 2c2aA |
| Description: | Structure of the entire cytoplasmic portion of a sensor histidine kinase protein |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [731-1025] |
1 11 21 31 41 51
| | | | | |
1 CDKAQDAQTL VHKQVHTQRV LVVEDNKVNA MVAQGFLAHL GHSSTLAASC QLALECVSAD 60
61 KAFDAVMLDI QLSDGSGVAL LPQLKALFGA KNVKFAAFTA QMQMEDLSLY REVGFDTVLA 120
121 KPLSLQTLTQ WLGVAMASSS LETESPGLSA SPSFISASSA PLAQATDTSG AIPLGNQATE 180
181 TLLDIEQLQQ DIEVLGVKAV SDMLALYKTS SAEQIERLSE ATFVESSADS AKLLHALKGS 240
241 SASMGLKALT QCCQVWEKQL KTTGAQKLEI QSANELRACW LASMTALEQW LVTVE
|
| Detection Method: | |
| Confidence: | 20.69897 |
| Match: | 1ny5A |
| Description: | Crystal structure of sigm54 activator (AAA+ ATPase) in the inactive state |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| two-component response regulator activity | 7.02872640261738 | bayes_pls_golite062009 |
| signal transducer activity | 4.51666042720644 | bayes_pls_golite062009 |
| molecular transducer activity | 4.51666042720644 | bayes_pls_golite062009 |
| transcription regulator activity | 3.44888100104099 | bayes_pls_golite062009 |
| protein histidine kinase activity | 2.35011582062573 | bayes_pls_golite062009 |
| two-component sensor activity | 2.32303301074957 | bayes_pls_golite062009 |
| phosphotransferase activity, nitrogenous group as acceptor | 2.28838869071567 | bayes_pls_golite062009 |
| binding | 1.22427537074115 | bayes_pls_golite062009 |
| DNA binding | 1.11037597107903 | bayes_pls_golite062009 |
| nucleic acid binding | 0.93151849951839 | bayes_pls_golite062009 |
| transcription factor activity | 0.62886970109503 | bayes_pls_golite062009 |
