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Protein Overview: gi|24346791, gi|...

General Information:
Name(s) found: gi|24372725 [NCBI NR]
gi|24346791 [NCBI NR]
Description(s) found:
Found 5 descriptions.
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  • gi|24372725|ref|NP_716767.1| carbamoyl phosphate synthase large subunit [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24346791|gb|AAN54212.1|AE015558_6 carbamoyl-phosphate synthase, large subunit [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 1074 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: pyrimidine ribonucleotide biosynthetic process [ISSLink to PubMed article]
    Molecular Function: carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKRTDIKSI LILGAGPIVI GQACEFDYSG AQACKALREE GYRVILVNSN PATIMTDPEM  60
   61 ADATYIEPIQ WEVVRNIIAK ERPDAILPTM GGQTALNCAL ELEAKGVLAE FNVEMIGATA 120
  121 DAIDKAEDRS RFDKAMKSIG LECPRAGIAH SMEEAYGVLE QVGFPCIIRP SFTMGGSGGG 180
  181 IAYNKEEFEE ICSQGLDLSP TKELLIDESL IGWKEYEMEV VRDRNDNCII VCSIENFDPM 240
  241 GVHTGDSITV APAQTLTDKE YQIMRNASMA VLREIGVETG GSNVQFGINP KDGRMVIIEM 300
  301 NPRVSRSSAL ASKATGFPIA KIAAKLAVGF TLDELMNDIT GGRTPASFEP AIDYVVTKVP 360
  361 RFNFEKFAGS NDRLTTQMKS VGEVMAIGRT FQESLQKALR GLEVNRHGLD PITDMSKPEA 420
  421 MARIRLELKE PGCDRIWYIA DAMRAGLTLD EIFRLTNIDP WFLVQIEELI KLEGQVAEAG 480
  481 LAGLNEELLR KLKRKGFADA RLAVVLGVNE SEVRKLRDRF DIHPVYKRVD TCAAEFATDT 540
  541 AYMYSTYEEE CEANPSNRDK IMVLGGGPNR IGQGIEFDYC CVHAALALRE DGYETIMVNC 600
  601 NPETVSTDYD TSDRLYFEPV TLEDVLEIVR IEKPKGVIVQ YGGQTPLKLA RALEAAGVPI 660
  661 IGTSPDAIDR AEDRERFQQA IQRLEMKQPE NDTVTTVEGA VIAAERIGYP LVVRPSYVLG 720
  721 GRAMEIVYDQ QDLLRYFNEA VSVSNASPVL LDHFLDDAIE VDIDAVCDGE TVVIGAIMEH 780
  781 IEQAGVHSGD SGCSLPPYTL SQEIQDRMRV QVGKLAMELG VVGLMNVQFA VKNNEIYMIE 840
  841 VNPRAARTVP FVSKATGVPL AKIAARVMAG QSLKAQNFTQ EVIPPFYSVK EVVLPFNKFP 900
  901 GVDPLLGPEM RSTGEVMGVG DTFAEAYAKA QLGATSEVPK SGRALLSVRN SDKKRVADLA 960
  961 AKLIELGYQI DATHGTAVIL GEAGINPRLV NKVHEGRPHI LDRIKNGEYT YIVNTTEGRQ1020
 1021 AIEDSRQLRR GALRYKVNYT TTMNAAFATC MAHAADDRTN VTSVQELHKR ILAK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..1074] PSI-BLAST 1000.0 Carbamoyl phosphate synthetase, large subunit connection domain; Carbamoyl phosphate synthetase, large subunit allosteric, C-terminal domain; Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains; Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • carbamoyl-phosphate synthase activity
    		•  10.3961907577933 bayes_pls_golite062009
  • carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
    		•  10.3817460390594 bayes_pls_golite062009
  • carbon-nitrogen ligase activity, with glutamine as amido-N-donor
    		•  7.55690629692775 bayes_pls_golite062009
  • ligase activity, forming carbon-nitrogen bonds
    		•  6.95559501787172 bayes_pls_golite062009
  • ligase activity
    		•  1.91091941710895 bayes_pls_golite062009
  • phosphoribosylaminoimidazole carboxylase activity
    		•  1.57708889650281 bayes_pls_golite062009
  • catalytic activity
    		•  1.08688404807699 bayes_pls_golite062009
  • phosphoribosylamine-glycine ligase activity
    		•  1.04915286326924 bayes_pls_golite062009
  • carbon-oxygen lyase activity, acting on phosphates
    		•  0.964679554894316 bayes_pls_golite062009
  • phosphoribosylaminoimidazolecarboxamide formyltransferase activity
    		•  0.898425265043358 bayes_pls_golite062009
  • acid-amino acid ligase activity
    		•  0.730894973410499 bayes_pls_golite062009
  • carbon-oxygen lyase activity
    		•  0.482425669839603 bayes_pls_golite062009
  • lyase activity
    		•  0.432948879967458 bayes_pls_golite062009
  • ligase activity, forming carbon-sulfur bonds
    		•  0.37779550230552 bayes_pls_golite062009
  • hydroxymethyl-, formyl- and related transferase activity
    		•  0.2431211195117 bayes_pls_golite062009
  • glutathione synthase activity
    		•  0.0685848191991462 bayes_pls_golite062009
  • biotin carboxylase activity
    		•  0.0172732430077291 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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