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Protein Overview: gi|24372517, gi|...

General Information:
Name(s) found: gi|24372517 [NCBI NR]
gi|24346522 [NCBI NR]
Description(s) found:
Found 4 descriptions.
SHOW ALL
  • gi|24372517|ref|NP_716559.1| transketolase [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24346522|gb|AAN54004.1|AE015538_1 transketolase [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 664 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: pentose-phosphate shunt [ISSLink to PubMed article]
    Molecular Function: transketolase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSRKVLANA IRALSMDAVQ KANSGHPGAP MGMADIAEVL WNDFLKHNPN NPKWVDRDRF  60
   61 ILSNGHGSML IYSLLHLTGY DLPMDELKQF RQLHSKTPGH PEYGYTPGVE TTTGPLGAGI 120
  121 SNAVGMAIAE KTLAAQFNRE GHEIVDHYTY CFLGDGCLME GISHEACSLA GTLGLGKLIA 180
  181 FWDDNGISID GHVEGWFTDD TPKRFESYGW HVIANVDGHD SDAIRAAIEA AKAVTDKPTM 240
  241 ICCKTIIGFG SPNKSGSHDC HGAPLGDAEI AAAREFLGWP HAPFEIPADV YAGWDAKDAG 300
  301 AAREAAWNDK FAAYAAAYPE LAAEYERRVL KGELPADFEA KAQAFIQECQ AKGEGIASRK 360
  361 ASQNAIAAFG AILPELLGGS ADLAGSNLTL WAGSKGIQDD PAGNYVYYGV REFGMSGIMN 420
  421 GVSLHGGFIN YGATFMMFME YARNAVRMSA LMGIQNIFVY THDSIGQGED GQLTNPFEQL 480
  481 ANLRMTPNMA VWRPCDAAET AVAWKAAIER RHAPTSLIFS RQNLKAQART AEQLANVAKG 540
  541 AYVLQDCAAT PEYILIATGS EVQLAMEAAA TLTEQGKQVR VVSMPSNTEF DKQDAAYKES 600
  601 VLPKAVTKRI AIEAAHTDFW YKYVGFEGTV VGMTTFGESA PGNVLLKHFG FTVENVLNAA 660
  661 KSLG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..664] PSI-BLAST 1000.0 Transketolase (TK), Pyr module; Transketolase (TK), PP module; Transketolase (TK), C-domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transketolase activity
    		•  6.17852985073866 bayes_pls_golite062009
  • oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
    		•  2.93250853993668 bayes_pls_golite062009
  • pyruvate dehydrogenase activity
    		•  2.81702263447118 bayes_pls_golite062009
  • pyruvate dehydrogenase (acetyl-transferring) activity
    		•  2.6977837113283 bayes_pls_golite062009
  • transferase activity, transferring aldehyde or ketonic groups
    		•  2.21959520697519 bayes_pls_golite062009
  • catalytic activity
    		•  0.545407789079971 bayes_pls_golite062009
  • binding
    		•  0.508291294830325 bayes_pls_golite062009
  • acetolactate synthase activity
    		•  0.159086519260601 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.52

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle