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Protein Overview: gi|24372243, gi|...

General Information:
Name(s) found: gi|24372243 [NCBI NR]
gi|24346164 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|24372243|ref|NP_716285.1| prophage MuSo1, positive regulator of late transcription, putative [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24346164|gb|AAN53730.1|AE015511_13 prophage MuSo1, positive regulator of late transcription, putative [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 151 amino acids

    Gene Ontology:
    Cellular Component: provirus [TASLink to PubMed article]
    Biological Process: regulation of transcription, DNA-dependent [ISSLink to PubMed article]
    Molecular Function: transcription factor activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKLKHDTVS VPDSQLDLLS TSAAELEQAL ETLATLKPDE REDFIRRWPS TLQSLCDVMR  60
   61 QTLKQYEIDN ADNVSEALAT SLSAYLGGRD IYIPNGERLK DALRDIRIWR EFKGNNLEQL 120
  121 SRDYGLTERR ISQIVAEQRA AFVARKQRRL F

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..151] PSI-BLAST 30.522879 Crystal structure of the Middle Operon Regulator protein of Bacteriophage Mu

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription regulator activity
    		•  4.40109979810528 bayes_pls_golite062009
  • DNA binding
    		•  3.97380881511761 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.85189707062435 bayes_pls_golite062009
  • transcription factor activity
    		•  3.39274403070192 bayes_pls_golite062009
  • binding
    		•  2.59846425523141 bayes_pls_golite062009
  • chromatin binding
    		•  2.36908418765944 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  1.78778767227314 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  1.62770491095944 bayes_pls_golite062009
  • transcription repressor activity
    		•  1.30387660027238 bayes_pls_golite062009
  • transcription activator activity
    		•  1.14443641055306 bayes_pls_golite062009
  • protein binding
    		•  0.830419844171551 bayes_pls_golite062009
  • transcription factor binding
    		•  0.79364083001684 bayes_pls_golite062009
  • specific RNA polymerase II transcription factor activity
    		•  0.54019576598836 bayes_pls_golite062009
  • transcription cofactor activity
    		•  0.25239015192597 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle