YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24372243, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	151 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24372243, gi|....

Description	E-value	Query Range	Subject Range
gi\|113950627, gi... - gi\|160875237\|ref\|YP_001554553.1\| Mor transcription activator domain-containing protein [Shewanella b...	165.0	[0..1]	[151..1]
ACTC_BPMU - Late transcription activator C OS=Enterobacteria phage Mu GN=C PE=1 SV=1 gi\|57904712 - gi\|57904712\|gb\|AAW58957.1\| regulator of late transcription [Cloning vector MuNXKan]	159.0	[0..15]	[151..2]
gi\|194430085, gi... - gi\|75208638\|ref\|ZP_00708942.1\| COG5566: Uncharacterized conserved protein [Escherichia coli B171], g...	159.0	[0..15]	[151..2]
gi\|75513101, gi\|... - gi\|75513101\|ref\|ZP_00735563.1\| COG5566: Uncharacterized conserved protein [Escherichia coli 53638], ...	159.0	[0..15]	[151..2]
gi\|36786769, gi\|... - gi\|37527335\|ref\|NP_930679.1\| hypothetical protein plu3461 [Photorhabdus luminescens subsp. laumondii...	149.0	[0..42]	[151..5]
gi\|25302032 - pir\|\|A91249 probable transcription regulator ECs4961 [imported] - Escherichia coli (strain O157:H7, ... gi\|15834215, gi\|... - gi\|15834215\|ref\|NP_312988.1\| putative transcription regulator [Escherichia coli O157:H7], gi\|1336443... gi\|15834215, gi\|... - gi\|15834215\|ref\|NP_312988.1\| putative transcription regulator [Escherichia coli O157:H7 str. Sakai],... gi\|168761531, gi... - gi\|189367985\|gb\|EDU86401.1\| putative transcription regulator [Escherichia coli O157:H7 str. EC4501],... gi\|217320607, gi... - gi\|217324386\|ref\|ZP_03440470.1\| putative transcription regulator [Escherichia coli O157:H7 str. TW14...	149.0	[0..11]	[151..1]
SO2668 - prophage MuSo2 positive regulator of late transcription, putative gi\|24374209, gi\|... - gi\|24374209\|ref\|NP_718252.1\| prophage MuSo2, positive regulator of late transcription, putative [She...	148.0	[0..17]	[151..20]
gi\|193066151, gi... - gi\|75255718\|ref\|ZP_00727479.1\| COG5566: Uncharacterized conserved protein [Escherichia coli E22], gi... gi\|227886031, gi... - gi\|227886031\|ref\|ZP_04003836.1\| phage transcriptional regulator [Escherichia coli 83972], gi\|2278369...	146.0	[0..40]	[151..3]
gi\|29137478, gi\|... - gi\|29141850\|ref\|NP_805192.1\| putative bacteriophage transcriptional regulator [Salmonella enterica s... gi\|16760386 - gi\|16760386\|ref\|NP_456003.1\| putative bacteriophage transcriptional regulator [Salmonella enterica s... gi\|213612809 - gi\|213612809\|ref\|ZP_03370635.1\| putative bacteriophage transcriptional regulator [Salmonella enteric... gi\|213579687 - gi\|213579687\|ref\|ZP_03361513.1\| putative bacteriophage transcriptional regulator [Salmonella enteric... gi\|213426796 - gi\|213426796\|ref\|ZP_03359546.1\| putative bacteriophage transcriptional regulator [Salmonella enteric... gi\|213052036 - gi\|213052036\|ref\|ZP_03344914.1\| putative bacteriophage transcriptional regulator [Salmonella enteric... gi\|218700273, gi... - gi\|218700273\|ref\|YP_002407902.1\| Putative DNA-binding protein from phage origin [Escherichia coli IA... gi\|213999399 - gi\|213999399\|ref\|ZP_03410134.1\| putative bacteriophage transcriptional regulator [Salmonella enteric... gi\|213854558 - gi\|213854558\|ref\|ZP_03382798.1\| putative bacteriophage transcriptional regulator [Salmonella enteric... gi\|213647033 - gi\|213647033\|ref\|ZP_03377086.1\| putative bacteriophage transcriptional regulator [Salmonella enteric... gi\|16502681, gi\|... - gi\|25302033\|pir\|\|AD0683 probable bacteriophage transcription regulator STY1591 [imported] - Salmonel...	146.0	[0..40]	[151..3]
gi\|75228542, gi\|... - gi\|75228542\|ref\|ZP_00715176.1\| COG5566: Uncharacterized conserved protein [Escherichia coli B7A], gi...	146.0	[0..40]	[151..3]

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Predicted Domain #1

Region A:
Residues: [1-151]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKLKHDTVS VPDSQLDLLS TSAAELEQAL ETLATLKPDE REDFIRRWPS TLQSLCDVMR  60
   61 QTLKQYEIDN ADNVSEALAT SLSAYLGGRD IYIPNGERLK DALRDIRIWR EFKGNNLEQL 120
  121 SRDYGLTERR ISQIVAEQRA AFVARKQRRL F

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.522879
Match:	1rr7A
Description:	Crystal structure of the Middle Operon Regulator protein of Bacteriophage Mu
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	4.40109979810528	bayes_pls_golite062009
DNA binding	3.97380881511761	bayes_pls_golite062009
nucleic acid binding	3.85189707062435	bayes_pls_golite062009
transcription factor activity	3.39274403070192	bayes_pls_golite062009
binding	2.59846425523141	bayes_pls_golite062009
chromatin binding	2.36908418765944	bayes_pls_golite062009
sequence-specific DNA binding	1.78778767227314	bayes_pls_golite062009
RNA polymerase II transcription factor activity	1.62770491095944	bayes_pls_golite062009
transcription repressor activity	1.30387660027238	bayes_pls_golite062009
transcription activator activity	1.14443641055306	bayes_pls_golite062009
protein binding	0.830419844171551	bayes_pls_golite062009
transcription factor binding	0.79364083001684	bayes_pls_golite062009
specific RNA polymerase II transcription factor activity	0.54019576598836	bayes_pls_golite062009
transcription cofactor activity	0.25239015192597	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: