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Protein Overview: gi|24372191, gi|...

General Information:
Name(s) found: gi|24372191 [NCBI NR]
gi|24346100 [NCBI NR]
Description(s) found:
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  • gi|24372191|ref|NP_716233.1| N-acetylmuramoyl-L-alanine amidase [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24346100|gb|AAN53678.1|AE015507_4 N-acetylmuramoyl-L-alanine amidase [Shewanella oneidensis MR-1] [NCBI NR]
  • N-acetylmuramoyl-L-alanine amidase [Shewanella oneidensis MR-1]gi|24346100|gb|AAN53678.1| N-acetylmuramoyl-L-alanine amidase [Shewanella oneidensis MR-1] [nrdb_11152004_Chlamydomonas]
  • N-acetylmuramoyl-L-alanine amidase [Shewanella oneidensis MR-1] [nr-271106-contam.fasta]
    • Organism: Shewanella oneidensis MR-1
    Length: 463 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: cell wall macromolecule catabolic process [ISSLink to PubMed article]
    Molecular Function: N-acetylmuramoyl-L-alanine amidase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKNKHYFQG IILLLCTFFA VAAQAANQLE SVRIWAAPES TRIVFDLSEV PNYSYFTLDG  60
   61 PNRLVVDLKK ASTKLNLKNV DNNSKLVKGI RVSKSPTKGD LRLVIDLVKP LNPNLFSLPV 120
  121 TAPYGNRLVV DLEDKSATAE LSAVSSTPVK KNVTQSVQAS RDIVIAIDAG HGGDDPGSIG 180
  181 PSGLYEKKVV FEISKRLASK INDTPGMRAV MIRSGDYFVN LNRRSELARN SKADLLISIH 240
  241 ADAFTSPNPR GASVWVLSMR RANSEIGRWL EQKEKHSELL GGAGEIIQNT DNEQYLAMTL 300
  301 LDMSMNSSMA IGHSVAGDIL KDLGAVTELH KSRPESASFA VLKSPDIPSI LVETGFISNP 360
  361 KEERLLSSSR HQESIATAIY KGVNRYFHNN PPADTLLAKK NTTGSTVKSS SKSAGTIKHK 420
  421 VSRGESLSAI AQRYKVPMAS IIRANGMKTD VVQLGQTLVI PES

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..157] MSA 10.329993 View MSA. No confident structure predictions are available.
    2 View Details [158..344] PSI-BLAST 25.30103 Structure of the catalytic domain of CwlV, N-acetylmuramoyl-L-alanine amidase from Bacillus(Paenibacillus) polymyxa var.colistinus
    3 View Details [345..463] FFAS03 3.07 The crystal structure of the listeria monocytogenes bacteriophage PSA endolysin PlyPSA

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • hydrolase activity
    		•  3.67722840912402 bayes_pls_golite062009
  • N-acetylmuramoyl-L-alanine amidase activity
    		•  3.0995594592309 bayes_pls_golite062009
  • peptidase activity
    		•  2.70319066310115 bayes_pls_golite062009
  • peptidase activity, acting on L-amino acid peptides
    		•  2.44249748878472 bayes_pls_golite062009
  • hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides
    		•  2.07011073073947 bayes_pls_golite062009
  • carboxypeptidase activity
    		•  1.95498314957158 bayes_pls_golite062009
  • catalytic activity
    		•  1.3989281287879 bayes_pls_golite062009
  • exopeptidase activity
    		•  0.606503700246216 bayes_pls_golite062009
  • metallopeptidase activity
    		•  0.117214777864168 bayes_pls_golite062009
  • binding
    		•  0.017794991206844 bayes_pls_golite062009
    3
    Term Confidence Notes
  • hydrolase activity
    		•  2.16627623907117 bayes_pls_golite062009
  • N-acetylmuramoyl-L-alanine amidase activity
    		•  1.62284955746999 bayes_pls_golite062009
  • hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides
    		•  1.17864252294526 bayes_pls_golite062009
  • catalytic activity
    		•  0.567704752440722 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle