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Protein Overview: PSH1_YEAST

General Information:
Name(s) found: PSH1_YEAST [Swiss-Prot]
Description(s) found:
  • RING finger protein PSH1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PSH1 PE=1 SV=1 [Swiss-Prot]
    • Organism: Saccharomyces cerevisiae S288c
    Length: 406 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDELHNRLL HQNDGTKDAI LYKIIESLVC SICHDYMFVP MMTPCGHNYC YGCLNTWFAS  60
   61 NTQKELACPQ CRSDITTIPA LNTTLQQYLS FILEKLRDQN DESFKKLLTT KTKEENDYKN 120
  121 DKEKDTLFDK VFKNSALAVA DDSDDGITRC SNCHWELDPD EVEDGNVCPH CNARIRNYAG 180
  181 GRDEFDEEEY SEGELDEIRE SMRRRRENRF ASTNPFANRD DVSSEDDDSS EEEPMREHIP 240
  241 LGRWARSHNR SIAVDAVDDE DDEEEDEEEE EEMDSDLKDF IEDDEDDEDE DGSRRNLVLS 300
  301 ALKNRHVIIT DDEEEEQRRH ATEEEDRDSD FYEHNDDGFV SGDSLDEDQK EVTRIQSSSD 360
  361 SEDRSLSYSG SSDVKDNNDD NTEELDDPQP KRQKRFRVVL GDSDDE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..107] PSI-BLAST 35.522879 Cbl; N-terminal domain of cbl (N-cbl); CBL
    2 View Details [108..181] PSI-BLAST 2.30103 Nuclear factor XNF7
    3 View Details [182..331] MSA 3.250986 View MSA. No confident structure predictions are available.
    4 View Details [332..406] PSI-BLAST 16.522879 TNF receptor associated factor 3 (TRAF3); TRAF3

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  3.3102740037962 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.72498741013971 bayes_pls_golite062009
  • protein binding
    		•  2.21219285272669 bayes_pls_golite062009
  • small conjugating protein ligase activity
    		•  2.17320579037083 bayes_pls_golite062009
  • ligase activity
    		•  2.11117401820312 bayes_pls_golite062009
  • chromatin binding
    		•  1.99809307900131 bayes_pls_golite062009
  • ubiquitin-protein ligase activity
    		•  1.97633825709135 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.9065986135632 bayes_pls_golite062009
  • DNA binding
    		•  1.76411499132759 bayes_pls_golite062009
  • specific RNA polymerase II transcription factor activity
    		•  1.63161912031789 bayes_pls_golite062009
  • acid-amino acid ligase activity
    		•  1.22312570999194 bayes_pls_golite062009
  • transcription factor binding
    		•  1.11842175076436 bayes_pls_golite062009
  • transcription factor activity
    		•  1.02112227272128 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.90321253993065 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.350170315296021 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  0.24963159801049 bayes_pls_golite062009
  • transcription cofactor activity
    		•  0.233838999434784 bayes_pls_golite062009
  • catalytic activity
    		•  0.14112008370434 bayes_pls_golite062009
  • transcription activator activity
    		•  0.126093965701234 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle