| Protein: | PSH1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 406 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PSH1.
| Description | E-value | Query Range |
Subject Range |
|
|
5.0E-74 | [1..406] | [1..406] |
|
|
4.0E-68 | [19..375] | [5..351] |
|
|
2.0E-64 | [16..369] | [2..325] |
|
Region A: Residues: [1-107] |
1 11 21 31 41 51
| | | | | |
1 MGDELHNRLL HQNDGTKDAI LYKIIESLVC SICHDYMFVP MMTPCGHNYC YGCLNTWFAS 60
61 NTQKELACPQ CRSDITTIPA LNTTLQQYLS FILEKLRDQN DESFKKL
|
| Detection Method: |  |
| Confidence: | 35.522879 |
| Match: | 1fbvA_ |
| Description: | Cbl; N-terminal domain of cbl (N-cbl); CBL |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 3.3102740037962 | bayes_pls_golite062009 |
| transcription regulator activity | 2.72498741013971 | bayes_pls_golite062009 |
| protein binding | 2.21219285272669 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 2.17320579037083 | bayes_pls_golite062009 |
| ligase activity | 2.11117401820312 | bayes_pls_golite062009 |
| chromatin binding | 1.99809307900131 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 1.97633825709135 | bayes_pls_golite062009 |
| nucleic acid binding | 1.9065986135632 | bayes_pls_golite062009 |
| DNA binding | 1.76411499132759 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.63161912031789 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 1.22312570999194 | bayes_pls_golite062009 |
| transcription factor binding | 1.11842175076436 | bayes_pls_golite062009 |
| transcription factor activity | 1.02112227272128 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.90321253993065 | bayes_pls_golite062009 |
| transcription repressor activity | 0.350170315296021 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 0.24963159801049 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.233838999434784 | bayes_pls_golite062009 |
| catalytic activity | 0.14112008370434 | bayes_pls_golite062009 |
| transcription activator activity | 0.126093965701234 | bayes_pls_golite062009 |
|
Region A: Residues: [108-181] |
1 11 21 31 41 51
| | | | | |
1 LTTKTKEEND YKNDKEKDTL FDKVFKNSAL AVADDSDDGI TRCSNCHWEL DPDEVEDGNV 60
61 CPHCNARIRN YAGG
|
| Detection Method: | |
| Confidence: | 2.30103 |
| Match: | 1fre__ |
| Description: | Nuclear factor XNF7 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [182-331] |
1 11 21 31 41 51
| | | | | |
1 RDEFDEEEYS EGELDEIRES MRRRRENRFA STNPFANRDD VSSEDDDSSE EEPMREHIPL 60
61 GRWARSHNRS IAVDAVDDED DEEEDEEEEE EMDSDLKDFI EDDEDDEDED GSRRNLVLSA 120
121 LKNRHVIITD DEEEEQRRHA TEEEDRDSDF
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [332-406] |
1 11 21 31 41 51
| | | | | |
1 YEHNDDGFVS GDSLDEDQKE VTRIQSSSDS EDRSLSYSGS SDVKDNNDDN TEELDDPQPK 60
61 RQKRFRVVLG DSDDE
|
| Detection Method: | |
| Confidence: | 16.522879 |
| Match: | 1flkA_ |
| Description: | TNF receptor associated factor 3 (TRAF3); TRAF3 |
Matching Structure (courtesy of the PDB): |
|
