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Protein Overview: IXR1_YEAST

General Information:
Name(s) found: IXR1_YEAST [Swiss-Prot]
Description(s) found:
  • Intrastrand cross-link recognition protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=IXR1 PE=1 SV=2 [Swiss-Prot]
    • Organism: Saccharomyces cerevisiae S288c
    Length: 597 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTGISPKQD DASNSNLLNI GQDHSLQYQG LEHNDSQYRD ASHQTPHQYL NQFQAQPQQQ  60
   61 QQQQQQQQQQ QQQAPYQGHF QQSPQQQQQN VYYPLPPQSL TQPTSQSQQQ QQQQQQQQYA 120
  121 NSNSNSNNNV NVNALPQDFG YMQQTGSGQN YPTINQQQFS EFYNSFLSHL TQKQTNPSVT 180
  181 GTGASSNNNS NNNNVSSGNN STSSNPAQLA ASQLNPATAA AAAANNAAGP ASYLSQLPQV 240
  241 QRYYPNNMNA LSSLLDPSSA GNAAGNANTA THPGLLPPNL QPQLTHHQQQ MQQQLQLQQQ 300
  301 QQLQQQQQLQ QQHQLQQQQQ LQQQHHHLQQ QQQQQQHPVV KKLSSTQSRI ERRKQLKKQG 360
  361 PKRPSSAYFL FSMSIRNELL QQFPEAKVPE LSKLASARWK ELTDDQKKPF YEEFRTNWEK 420
  421 YRVVRDAYEK TLPPKRPSGP FIQFTQEIRP TVVKENPDKG LIEITKIIGE RWRELDPAKK 480
  481 AEYTETYKKR LKEWESCYPD ENDPNGNPTG HSHKAMNMNL NMDTKIMENQ DSIEHITANA 540
  541 IDSVTGSNSN STNPNTPVSP PISLQQQPLQ QQQQQQQQQQ HMLLADPTTN GSIIKNE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..121] MSA 1.017991 View MSA. No confident structure predictions are available.
    2 View Details [122..173] deduced N/A No confident structure predictions are available.
    3 View Details [174..336] PSI-BLAST 39.071898 Upstream binding factor
    4 View Details [337..427] PSI-BLAST 58.045757 Sox-5
    5 View Details [428..511] PSI-BLAST 41.29073 NHP6a
    6 View Details [512..597] MSA 1.177993 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  3.04393542109417 bayes_pls_golite062009
  • DNA binding
    		•  1.88326659692279 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.85157640081091 bayes_pls_golite062009
  • chromatin binding
    		•  1.82810083714605 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.34639198670075 bayes_pls_golite062009
  • protein binding
    		•  1.33904668423876 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  1.08208740778246 bayes_pls_golite062009
  • transcription factor activity
    		•  0.585772620695985 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.45921402500371 bayes_pls_golite062009
  • transcription factor binding
    		•  0.19768703289845 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.16971196361447 bayes_pls_golite062009
    3
    Term Confidence Notes
  • binding
    		•  3.04393542109417 bayes_pls_golite062009
  • DNA binding
    		•  1.88326659692279 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.85157640081091 bayes_pls_golite062009
  • chromatin binding
    		•  1.82810083714605 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.34639198670075 bayes_pls_golite062009
  • protein binding
    		•  1.33904668423876 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  1.08208740778246 bayes_pls_golite062009
  • transcription factor activity
    		•  0.585772620695985 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.45921402500371 bayes_pls_golite062009
  • transcription factor binding
    		•  0.19768703289845 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.16971196361447 bayes_pls_golite062009
    4
    Term Confidence Notes
  • binding
    		•  3.04393542109417 bayes_pls_golite062009
  • DNA binding
    		•  1.88326659692279 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.85157640081091 bayes_pls_golite062009
  • chromatin binding
    		•  1.82810083714605 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.34639198670075 bayes_pls_golite062009
  • protein binding
    		•  1.33904668423876 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  1.08208740778246 bayes_pls_golite062009
  • transcription factor activity
    		•  0.585772620695985 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.45921402500371 bayes_pls_golite062009
  • transcription factor binding
    		•  0.19768703289845 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.16971196361447 bayes_pls_golite062009
    5 No functions predicted.
    6 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle