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Protein Overview: gi|42563304, gi|...

General Information:
Name(s) found: gi|52421301 [NCBI NR]
gi|51536472 [NCBI NR]
gi|42563304 [NCBI NR]
Description(s) found:
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  • gi|52421301|gb|AAU45220.1| At1g78010 [Arabidopsis thaliana] [NCBI NR]
  • gi|51536472|gb|AAU05474.1| At1g78010 [Arabidopsis thaliana] [NCBI NR]
  • gi|42563304|ref|NP_177924.3| tRNA modification GTPase, putative [Arabidopsis thaliana] [NCBI NR]
  • At1g78010 [Arabidopsis thaliana]gi|51536472|gb|AAU05474.1| At1g78010 [Arabidopsis thaliana]gi|42563304|ref|NP_177924.3| tRNA modification GTPase, putative [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 TRNA modification GTPase [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | tRNA modification GTPase, putative | chr1:29338429-29341191 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • At1g78010 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • GTP binding / GTPase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | tRNA modification GTPase, putative | chr1:29333535-29336297 FORWARD LENGTH=560 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At1g78010 OS=Arabidopsis thaliana GN=At1g78010 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 560 amino acids

    Gene Ontology:
    Cellular Component: intracellular [IEA]
    Biological Process: small GTPase mediated signal transduction [IEA]
    tRNA modification [IEA][ISS]
    Molecular Function: GTP binding [IEA]
    GTPase activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSLLCFRSV GVYLLRQATP IITRGGRISR PISKNLCFVL FSSSPKTSLL KPRAQSSENN  60
   61 SLVFKGDERV VGLVGKVVDD AFDKVDRFQS SSTIVAIVTP IGGPPGAVGI VRLSGPKAVE 120
  121 VARRVFRSAK KTKKKESDSD TWRPKSHFVE YGAVVDSNGN VVDEVLAVPM LAPRSYTRED 180
  181 VVELQCHGSE VCLRRVLRTC VEAGARLAEP GEFTLRAFLN GRLDLSQAEN VEKLISAKSS 240
  241 AAADAALEGI QGGFSSLVKS LRAQCIELLT EIEARLDFED EMPPLDIESV INKITSMSQD 300
  301 VESALDTANY DKLLQSGLQI AIVGRPNVGK SSLLNAWSKS ERAIVTEVAG TTRDVVEANV 360
  361 TVRGVPITLL DTAGIRETND IVEKIGVERS ETAAKVADVI IMAVSAVEGW TEEDTELLRK 420
  421 IQSDKPMILV MNKIDCAPPG SCDQLEDQRK KEEVFHKSVF TSAVTGQGIE ELEDAILEIL 480
  481 GLDRVPTGGH QWTVNQRQCE QLVRTKEALV RLREAIEDEI PIDFWTIELR EAALSLAQIS 540
  541 GQDVSEEVLS SIFAKFCIGK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..560] PSI-BLAST 86.69897 Structure of the GTP-binding protein TrmE from Thermotoga maritima

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • methyltransferase activity
    		•  3.28983380541263 bayes_pls_golite062009
  • transferase activity, transferring one-carbon groups
    		•  3.20782575104451 bayes_pls_golite062009
  • catalytic activity
    		•  1.65079399897053 bayes_pls_golite062009
  • transferase activity
    		•  1.3676947912529 bayes_pls_golite062009
  • coenzyme binding
    		•  1.08379167900905 bayes_pls_golite062009
  • cofactor binding
    		•  0.96468813458034 bayes_pls_golite062009
  • ATP binding
    		•  0.60527666756293 bayes_pls_golite062009
  • aminomethyltransferase activity
    		•  0.573831999310668 bayes_pls_golite062009
  • adenyl ribonucleotide binding
    		•  0.573214556107072 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.544057265221809 bayes_pls_golite062009
  • ligase activity
    		•  0.417681194526243 bayes_pls_golite062009
  • binding
    		•  0.394312443474767 bayes_pls_golite062009
  • RNA helicase activity
    		•  0.18362676509797 bayes_pls_golite062009
  • DNA binding
    		•  0.156173690421144 bayes_pls_golite062009
  • RNA-dependent ATPase activity
    		•  0.0388696977166548 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.82

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle