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Protein Overview: gi|22655228, gi|...

General Information:
Name(s) found: gi|51971441 [NCBI NR]
gi|30693135 [NCBI NR]
gi|30387523 [NCBI NR]
gi|22655228 [NCBI NR]
Description(s) found:
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  • gi|51971441|dbj|BAD44385.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • gi|30693135|ref|NP_190477.2| ribosomal protein S9 family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|30387523|gb|AAP31927.1| At3g49080 [Arabidopsis thaliana] [NCBI NR]
  • gi|22655228|gb|AAM98204.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • At3g49080 [Arabidopsis thaliana]gi|22655228|gb|AAM98204.1| unknown protein [Arabidopsis thaliana]gi|51971441|dbj|BAD44385.1| hypothetical protein [Arabidopsis thaliana]gi|30693135|ref|NP_190477.2| ribosomal protein S9 family protein [Arabidopsis thalia [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Ribosomal protein S9 family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | ribosomal protein S9 family protein | chr3:18205485-18207642 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • hypothetical protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At3g49080 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • structural constituent of ribosome [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Ribosomal protein S5 domain 2-like superfamily protein | chr3:18194500-18196657 REVERSE LENGTH=430 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At3g49080 OS=Arabidopsis thaliana GN=At3g49080:At3g49090 PE=2 SV=1 [ARATH-contam.fasta]
  • At3g49080 OS=Arabidopsis thaliana GN=At3g49080 PE=2 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 430 amino acids

    Gene Ontology:
    Cellular Component: cytosolic small ribosomal subunit [ISS]
    ribosome [IEA]
    intracellular [IEA]
    Biological Process: translation [IEA][ISS]
    Molecular Function: structural constituent of ribosome [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSRLFLRHS NLRFVTLVSS KSNSQIFSSF IRPLSTNSSG GGGNGDGNGR NRNDVPWSFT  60
   61 GVNDDKSGPF SSDDSFGSSG VAGSGLPGGE GKWPEEPKRW NIKEEEEKVV FDTGGEVGQG 120
  121 IETSRERRGN EWEETKRWDM KEGEEKVVFG GGGDEVDGFG IRGEVKSNEW DVSKPWNLKE 180
  181 EEEGVVFDTG GEVPFSFENS LEMAEEERVK KELIEKEEKE LLEVIKGPDR AFGDLIAKSG 240
  241 ITDEMLDSLI ALKDFQGVEG LPPLTEIENL RREKSSKKSS RAEIELQMQE DIAKARVRQV 300
  301 DETGRAYGTG RRKCSIARVW IQPGEGKFQV NEKEFDVYFP MLDHRAALLR PLAETKTLGR 360
  361 WDIKCTVKGG GTTGQVGAIQ LGISRALQNW EPDMRTSLRA AGFLTRDSRV VERKKPGKAK 420
  421 ARKSFQWVKR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..298] deduced N/A No confident structure predictions are available.
    2 View Details [299..430] PSI-BLAST 48.30103 No description for 1vs5I was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • structural constituent of ribosome
    		•  7.32829196949019 bayes_pls_golite062009
  • structural molecule activity
    		•  6.75880680396215 bayes_pls_golite062009
  • 3'-5'-exoribonuclease activity
    		•  1.56111033008721 bayes_pls_golite062009
  • RNA binding
    		•  1.40868766468494 bayes_pls_golite062009
  • exoribonuclease activity, producing 5'-phosphomonoesters
    		•  1.35935222635763 bayes_pls_golite062009
  • exoribonuclease activity
    		•  1.31205157616894 bayes_pls_golite062009
  • 3'-5' exonuclease activity
    		•  1.10842504252923 bayes_pls_golite062009
  • catalytic activity
    		•  0.878454819018611 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.555181608481691 bayes_pls_golite062009
  • binding
    		•  0.478154009944658 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.368412900600617 bayes_pls_golite062009
  • ribonuclease activity
    		•  0.19921800066954 bayes_pls_golite062009
  • DNA binding
    		•  0.0880977286684361 bayes_pls_golite062009
  • mRNA binding
    		•  0.0491645692672305 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  6.9430052008157E-5 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle