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Protein Overview: gi|18404909, gi|...

General Information:
Name(s) found: gi|18404909 [NCBI NR]
gi|14532738 [NCBI NR]
gi|13430458 [NCBI NR]
Description(s) found:
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  • gi|18404909|ref|NP_564657.1| spliceosome protein-related [Arabidopsis thaliana] [NCBI NR]
  • gi|14532738|gb|AAK64070.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|13430458|gb|AAK25851.1|AF360141_1 unknown protein [Arabidopsis thaliana] [NCBI NR]
  • unknown protein [Arabidopsis thaliana]gi|13430458|gb|AAK25851.1| unknown protein [Arabidopsis thaliana]gi|18404909|ref|NP_564657.1| spliceosome protein-related [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Spliceosome protein-related [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | spliceosome protein-related | chr1:20301954-20304566 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | spliceosome protein-related | chr1:20298287-20300899 REVERSE LENGTH=515 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Putative uncharacterized protein At1g54380 OS=Arabidopsis thaliana GN=At1g54380 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 515 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: spliceosome assembly [IEA]
    nuclear mRNA splicing, via spliceosome [IEA]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMTNSDSDHC TPAKTSISGD GLEKESDFKK QLNSEIDPQA SSSQNDAITM EDGAVSVNNR  60
   61 DLQEIKESSF SKGSEQYRVD GALEESLNFE EKEQESEAQR LLEAEKRRLL AEIELGSIFR 120
  121 KSVDVDTLPK IEETMDNDVD KIELVDHTAL VDVVHHPKRP GTAQNEKDTP RKLKKIGDKR 180
  181 NVIEGSGVEN NGKQFRRLYT RKQLESMRFA HIVNQKNLWS EMYSRILPEV VTEYESLVYV 240
  241 KNYKSSKSNR VRGRTESGNE ENLGTEEGTE DPEDYTDDND DYNSILRPAF EVDGEPDFST 300
  301 GPPEDGLEYL RRVRWEAKGI PNVRVAKIDE STYIKKEQSV YMPLIPEIPK CPEYLLPMKE 360
  361 WEDSLLLDFV HLRQTLTQSA NSCEDEIISS QCVEDLLVEM FNKHLHTEED ESFGEVVTDI 420
  421 QGMDSVTRVS KLKKRICLVE KESGLQSSDC KWVVALCASL ETPLDADTCA CLRGLLRKCA 480
  481 SVRAETSLEV GDEEVITMAN MLITIAGRYF GQMGQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..283] FFAS03 1.09 No description for 2i1jA was found.
    2 View Details [284..515] FFAS03 1.09 Bacteriorhodopsin

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • signal transducer activity
    		•  0.962876380535311 bayes_pls_golite062009
  • molecular transducer activity
    		•  0.962876380535311 bayes_pls_golite062009
  • receptor activity
    		•  0.869047926372052 bayes_pls_golite062009
  • transmembrane receptor activity
    		•  0.523578064861943 bayes_pls_golite062009
  • G-protein coupled receptor activity
    		•  0.389220516476528 bayes_pls_golite062009
  • binding
    		•  0.0227247310453034 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle