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View Structure Prediction Details

Protein: gi|18404909, gi|...
Organism: Arabidopsis thaliana
Length: 515 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|18404909, gi|....

Description E-value Query
Range
Subject
Range
gi|4585998, gi|2... - gi|4585998|gb|AAD25634.1|AC005287_36 Hypothetical protein [Arabidopsis thaliana], pir||F96585 hypoth...
352.0 [0..1] [282..586]

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Predicted Domain #1
Region A:
Residues: [1-283]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMTNSDSDHC TPAKTSISGD GLEKESDFKK QLNSEIDPQA SSSQNDAITM EDGAVSVNNR  60
   61 DLQEIKESSF SKGSEQYRVD GALEESLNFE EKEQESEAQR LLEAEKRRLL AEIELGSIFR 120
  121 KSVDVDTLPK IEETMDNDVD KIELVDHTAL VDVVHHPKRP GTAQNEKDTP RKLKKIGDKR 180
  181 NVIEGSGVEN NGKQFRRLYT RKQLESMRFA HIVNQKNLWS EMYSRILPEV VTEYESLVYV 240
  241 KNYKSSKSNR VRGRTESGNE ENLGTEEGTE DPEDYTDDND DYN

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.09
Match: 2i1jA
Description: No description for 2i1jA was found.

Predicted Domain #2
Region A:
Residues: [284-515]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SILRPAFEVD GEPDFSTGPP EDGLEYLRRV RWEAKGIPNV RVAKIDESTY IKKEQSVYMP  60
   61 LIPEIPKCPE YLLPMKEWED SLLLDFVHLR QTLTQSANSC EDEIISSQCV EDLLVEMFNK 120
  121 HLHTEEDESF GEVVTDIQGM DSVTRVSKLK KRICLVEKES GLQSSDCKWV VALCASLETP 180
  181 LDADTCACLR GLLRKCASVR AETSLEVGDE EVITMANMLI TIAGRYFGQM GQ

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.09
Match: 1c8sA
Description: Bacteriorhodopsin
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
signal transducer activity 0.962876380535311 bayes_pls_golite062009
molecular transducer activity 0.962876380535311 bayes_pls_golite062009
receptor activity 0.869047926372052 bayes_pls_golite062009
transmembrane receptor activity 0.523578064861943 bayes_pls_golite062009
G-protein coupled receptor activity 0.389220516476528 bayes_pls_golite062009
binding 0.0227247310453034 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle