YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: CCR4A_ARATH

General Information:
Name(s) found: CCR4A_ARATH [Swiss-Prot]
Description(s) found:
SHOW ONLY BEST
  • gi|75248588|sp|Q8W0Z9.1|CCR4A_ARATH RecName: Full=Carbon catabolite repressor protein 4 homolog 1; Short=CCR4 homolog 1 [NCBI NR]
  • gi|22331849|ref|NP_191415.2| endonuclease/exonuclease/phosphatase family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|22137046|gb|AAM91368.1| At3g58560/F14P22_150 [Arabidopsis thaliana] [NCBI NR]
  • gi|18087604|gb|AAL58932.1|AF462845_1 AT3g58560/F14P22_150 [Arabidopsis thaliana] [NCBI NR]
  • Carbon catabolite repressor protein 4 homolog 1 OS=Arabidopsis thaliana GN=CCR4-1 PE=2 SV=1 [Swiss-Prot]
  • At3g58560/F14P22_150 [Arabidopsis thaliana]gi|18087604|gb|AAL58932.1| AT3g58560/F14P22_150 [Arabidopsis thaliana]gi|22331849|ref|NP_191415.2| endonuclease/exonuclease/phosphatase family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Endonuclease/exonuclease/phosphatase family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | endonuclease/exonuclease/phosphatase family protein | chr3:21661857-21664873 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • hydrolase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At3g58560/F14P22_150 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • AT3g58560/F14P22_150 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | DNAse I-like superfamily protein | chr3:21650880-21653896 REVERSE LENGTH=602 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 602 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: biological_process [ND]
    Molecular Function: hydrolase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSVIRVHLP SEIPIVGCEL TPYVLLRRPD KTPSTDDVPE SAPLEGHFLK YRWFRVQSDK  60
   61 KVAICSVHPS ETATLQCLGC LKSKVPVAKS YHCSTKCFSD AWQHHRVLHE RAASAATEGN 120
  121 DEEELPRLNS SGSGSGVLST SVSLTNGSSS VYPSAITQKT GAGGETLVEV GRSKTYTPMA 180
  181 DDICHVLKFE CVVVNAETKQ NVGLSCTILT SRVIPAPSPS PRRLISISGT DVTGHLDSNG 240
  241 RPLSMGTFTV LSYNILSDTY ASSDIYSYCP TWALAWTYRR QNLLREIVKY RADIVCLQEV 300
  301 QNDHFEEFFL PELDKHGYQG LFKRKTNEVF IGNTNTIDGC ATFFRRDRFS HVKKYEVEFN 360
  361 KAAQSLTEAI IPVSQKKNAL NRLVKDNVAL IVVLEAKFGS QAADNPGKRQ LLCVANTHVN 420
  421 VPHELKDVKL WQVHTLLKGL EKIAASADIP MLVCGDFNTV PASAPHTLLA VGKVDPLHPD 480
  481 LMVDPLGILR PHSKLTHQLP LVSAYSQFAK MGGNVITEQQ RRRLDPASSE PLFTNCTRDF 540
  541 IGTLDYIFYT ADTLTVESLL ELLDEESLRK DTALPSPEWS SDHIALLAEF RCMPRARRNN 600
  601 IL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..114] FFAS03 1.6 No description for 2d8qA was found.
    2 View Details [115..245] PSI-BLAST 18.0 Crystal structure of Human Methionine Aminopeptidase Type I with a third cobalt in the active site
    3 View Details [246..602] PSI-BLAST 27.0 DNA repair endonuclease Hap1

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription regulator activity
    		•  2.48298025894013 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.27695396544623 bayes_pls_golite062009
  • DNA binding
    		•  2.13220564234684 bayes_pls_golite062009
  • binding
    		•  2.04387193075129 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  1.41949477529902 bayes_pls_golite062009
  • transcription activator activity
    		•  0.570282420961288 bayes_pls_golite062009
  • protein binding
    		•  0.520486355666439 bayes_pls_golite062009
    2 No functions predicted.
    3
    Term Confidence Notes
  • hydrolase activity
    		•  3.28400034252781 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  3.04161110413795 bayes_pls_golite062009
  • DNA binding
    		•  2.38216646754749 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.37867140645121 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.37728600449241 bayes_pls_golite062009
  • nuclease activity
    		•  1.78432551160775 bayes_pls_golite062009
  • catalytic activity
    		•  1.76511376991978 bayes_pls_golite062009
  • binding
    		•  1.74593496417303 bayes_pls_golite062009
  • deoxyribonuclease activity
    		•  1.6713040226181 bayes_pls_golite062009
  • transcription coactivator activity
    		•  1.51022821676155 bayes_pls_golite062009
  • exonuclease activity
    		•  1.44893971411928 bayes_pls_golite062009
  • exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters
    		•  1.25010124971419 bayes_pls_golite062009
  • ribonuclease activity
    		•  0.934548175624486 bayes_pls_golite062009
  • transcription activator activity
    		•  0.885026804340494 bayes_pls_golite062009
  • transcription factor binding
    		•  0.77254170640454 bayes_pls_golite062009
  • exodeoxyribonuclease activity, producing 5'-phosphomonoesters
    		•  0.738975226345995 bayes_pls_golite062009
  • exodeoxyribonuclease activity
    		•  0.73001958440393 bayes_pls_golite062009
  • transcription cofactor activity
    		•  0.58884884939295 bayes_pls_golite062009
  • protein binding
    		•  0.476649214025345 bayes_pls_golite062009
  • endonuclease activity
    		•  0.288539805949629 bayes_pls_golite062009
  • inositol or phosphatidylinositol phosphatase activity
    		•  0.228910502815798 bayes_pls_golite062009
  • phosphoric ester hydrolase activity
    		•  0.100365481550461 bayes_pls_golite062009
  • phosphatase activity
    		•  0.00559251346312178 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle