| Protein: | CCR4A_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 602 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CCR4A_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
512.0 | [0..1] | [602..1] |
|
Region A: Residues: [1-114] |
1 11 21 31 41 51
| | | | | |
1 MLSVIRVHLP SEIPIVGCEL TPYVLLRRPD KTPSTDDVPE SAPLEGHFLK YRWFRVQSDK 60
61 KVAICSVHPS ETATLQCLGC LKSKVPVAKS YHCSTKCFSD AWQHHRVLHE RAAS
|
| Detection Method: |  |
| Confidence: | 1.6 |
| Match: | 2d8qA |
| Description: | No description for 2d8qA was found. |
| Term | Confidence | Notes |
| transcription regulator activity | 2.48298025894013 | bayes_pls_golite062009 |
| nucleic acid binding | 2.27695396544623 | bayes_pls_golite062009 |
| DNA binding | 2.13220564234684 | bayes_pls_golite062009 |
| binding | 2.04387193075129 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.41949477529902 | bayes_pls_golite062009 |
| transcription activator activity | 0.570282420961288 | bayes_pls_golite062009 |
| protein binding | 0.520486355666439 | bayes_pls_golite062009 |
|
Region A: Residues: [115-245] |
1 11 21 31 41 51
| | | | | |
1 AATEGNDEEE LPRLNSSGSG SGVLSTSVSL TNGSSSVYPS AITQKTGAGG ETLVEVGRSK 60
61 TYTPMADDIC HVLKFECVVV NAETKQNVGL SCTILTSRVI PAPSPSPRRL ISISGTDVTG 120
121 HLDSNGRPLS M
|
| Detection Method: | |
| Confidence: | 18.0 |
| Match: | 2b3hA |
| Description: | Crystal structure of Human Methionine Aminopeptidase Type I with a third cobalt in the active site |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [246-602] |
1 11 21 31 41 51
| | | | | |
1 GTFTVLSYNI LSDTYASSDI YSYCPTWALA WTYRRQNLLR EIVKYRADIV CLQEVQNDHF 60
61 EEFFLPELDK HGYQGLFKRK TNEVFIGNTN TIDGCATFFR RDRFSHVKKY EVEFNKAAQS 120
121 LTEAIIPVSQ KKNALNRLVK DNVALIVVLE AKFGSQAADN PGKRQLLCVA NTHVNVPHEL 180
181 KDVKLWQVHT LLKGLEKIAA SADIPMLVCG DFNTVPASAP HTLLAVGKVD PLHPDLMVDP 240
241 LGILRPHSKL THQLPLVSAY SQFAKMGGNV ITEQQRRRLD PASSEPLFTN CTRDFIGTLD 300
301 YIFYTADTLT VESLLELLDE ESLRKDTALP SPEWSSDHIA LLAEFRCMPR ARRNNIL
|
| Detection Method: | |
| Confidence: | 27.0 |
| Match: | 1e9nA |
| Description: | DNA repair endonuclease Hap1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| hydrolase activity | 3.28400034252781 | bayes_pls_golite062009 |
| hydrolase activity, acting on ester bonds | 3.04161110413795 | bayes_pls_golite062009 |
| DNA binding | 2.38216646754749 | bayes_pls_golite062009 |
| transcription regulator activity | 2.37867140645121 | bayes_pls_golite062009 |
| nucleic acid binding | 2.37728600449241 | bayes_pls_golite062009 |
| nuclease activity | 1.78432551160775 | bayes_pls_golite062009 |
| catalytic activity | 1.76511376991978 | bayes_pls_golite062009 |
| binding | 1.74593496417303 | bayes_pls_golite062009 |
| deoxyribonuclease activity | 1.6713040226181 | bayes_pls_golite062009 |
| transcription coactivator activity | 1.51022821676155 | bayes_pls_golite062009 |
| exonuclease activity | 1.44893971411928 | bayes_pls_golite062009 |
| exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | 1.25010124971419 | bayes_pls_golite062009 |
| ribonuclease activity | 0.934548175624486 | bayes_pls_golite062009 |
| transcription activator activity | 0.885026804340494 | bayes_pls_golite062009 |
| transcription factor binding | 0.77254170640454 | bayes_pls_golite062009 |
| exodeoxyribonuclease activity, producing 5'-phosphomonoesters | 0.738975226345995 | bayes_pls_golite062009 |
| exodeoxyribonuclease activity | 0.73001958440393 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.58884884939295 | bayes_pls_golite062009 |
| protein binding | 0.476649214025345 | bayes_pls_golite062009 |
| endonuclease activity | 0.288539805949629 | bayes_pls_golite062009 |
| inositol or phosphatidylinositol phosphatase activity | 0.228910502815798 | bayes_pls_golite062009 |
| phosphoric ester hydrolase activity | 0.100365481550461 | bayes_pls_golite062009 |
| phosphatase activity | 0.00559251346312178 | bayes_pls_golite062009 |
