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Protein Overview: CSN3_ARATH

General Information:
Name(s) found: CSN3_ARATH [Swiss-Prot]
Description(s) found:
Found 16 descriptions.
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  • COP9 signalosome complex subunit 3 OS=Arabidopsis thaliana GN=CSN3 PE=1 SV=2 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 429 amino acids

    Gene Ontology:
    Cellular Component: signalosome [IPI][TAS]
    Biological Process: photomorphogenesis [TAS]
    G2 phase of mitotic cell cycle [IMP]
    cullin deneddylation [IMP]
    Molecular Function: protein binding [IPI]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIGAVNSVEA VITSIQGLSG SPEDLSALHD LLRGAQDSLR AEPGVNFSTL DQLDASKHSL  60
   61 GYLYFLEVLT CGPVSKEKAA YEIPIIARFI NSCDAGQIRL ASYKFVSLCK ILKDHVIALG 120
  121 DPLRGVGPLL NAVQKLQVSS KRLTALHPDV LQLCLQAKSY KSGFSILSDD IVEIDQPRDF 180
  181 FLYSYYGGMI CIGLKRFQKA LELLYNVVTA PMHQVNAIAL EAYKKYILVS LIHNGQFTNT 240
  241 LPKCASTAAQ RSFKNYTGPY IELGNCYNDG KIGELEALVV ARNAEFEEDK NLGLVKQAVS 300
  301 SLYKRNILRL TQKYLTLSLQ DIANMVQLGN AKEAEMHVLQ MIQDGQIHAL INQKDGMVRF 360
  361 LEDPEQYKSS EMIEIMDSVI QRTIGLSKNL LAMDESLSCD PLYLGKVGRE RQRYDFGDDF 420
  421 DTVPQKFSM

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..302] FFAS03 1.08 Vesicular transport protein sec17
    2 View Details [303..429] PSI-BLAST 9.0 Solution structure of the PCI domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  2.64850159998065 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.90824469591674 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.64804251600372 bayes_pls_golite062009
  • DNA binding
    		•  1.57050838088106 bayes_pls_golite062009
  • protein binding
    		•  1.51322932625387 bayes_pls_golite062009
  • transcription factor activity
    		•  0.906067657170363 bayes_pls_golite062009
  • transcription factor binding
    		•  0.370606597126089 bayes_pls_golite062009
  • transcription cofactor activity
    		•  0.0711676373631946 bayes_pls_golite062009
    2
    Term Confidence Notes
  • transcription regulator activity
    		•  5.09178084244715 bayes_pls_golite062009
  • DNA binding
    		•  4.69269372393889 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.59221092058767 bayes_pls_golite062009
  • transcription factor activity
    		•  4.01234546864709 bayes_pls_golite062009
  • binding
    		•  3.52874320222492 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  2.23304004014963 bayes_pls_golite062009
  • transcription activator activity
    		•  2.21230033124772 bayes_pls_golite062009
  • transcription repressor activity
    		•  2.09951094757211 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  1.40206639526766 bayes_pls_golite062009
  • transcription factor binding
    		•  0.78051974537344 bayes_pls_golite062009
  • protein binding
    		•  0.753698599635855 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle