| Protein: | CSN3_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 429 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CSN3_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
289.0 | [0..5] | [428..2] |
|
Region A: Residues: [1-302] |
1 11 21 31 41 51
| | | | | |
1 MIGAVNSVEA VITSIQGLSG SPEDLSALHD LLRGAQDSLR AEPGVNFSTL DQLDASKHSL 60
61 GYLYFLEVLT CGPVSKEKAA YEIPIIARFI NSCDAGQIRL ASYKFVSLCK ILKDHVIALG 120
121 DPLRGVGPLL NAVQKLQVSS KRLTALHPDV LQLCLQAKSY KSGFSILSDD IVEIDQPRDF 180
181 FLYSYYGGMI CIGLKRFQKA LELLYNVVTA PMHQVNAIAL EAYKKYILVS LIHNGQFTNT 240
241 LPKCASTAAQ RSFKNYTGPY IELGNCYNDG KIGELEALVV ARNAEFEEDK NLGLVKQAVS 300
301 SL
|
| Detection Method: |  |
| Confidence: | 1.08 |
| Match: | 1qqeA |
| Description: | Vesicular transport protein sec17 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.64850159998065 | bayes_pls_golite062009 |
| transcription regulator activity | 1.90824469591674 | bayes_pls_golite062009 |
| nucleic acid binding | 1.64804251600372 | bayes_pls_golite062009 |
| DNA binding | 1.57050838088106 | bayes_pls_golite062009 |
| protein binding | 1.51322932625387 | bayes_pls_golite062009 |
| transcription factor activity | 0.906067657170363 | bayes_pls_golite062009 |
| transcription factor binding | 0.370606597126089 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.0711676373631946 | bayes_pls_golite062009 |
|
Region A: Residues: [303-429] |
1 11 21 31 41 51
| | | | | |
1 YKRNILRLTQ KYLTLSLQDI ANMVQLGNAK EAEMHVLQMI QDGQIHALIN QKDGMVRFLE 60
61 DPEQYKSSEM IEIMDSVIQR TIGLSKNLLA MDESLSCDPL YLGKVGRERQ RYDFGDDFDT 120
121 VPQKFSM
|
| Detection Method: | |
| Confidence: | 9.0 |
| Match: | 1ufmA |
| Description: | Solution structure of the PCI domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.09178084244715 | bayes_pls_golite062009 |
| DNA binding | 4.69269372393889 | bayes_pls_golite062009 |
| nucleic acid binding | 4.59221092058767 | bayes_pls_golite062009 |
| transcription factor activity | 4.01234546864709 | bayes_pls_golite062009 |
| binding | 3.52874320222492 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.23304004014963 | bayes_pls_golite062009 |
| transcription activator activity | 2.21230033124772 | bayes_pls_golite062009 |
| transcription repressor activity | 2.09951094757211 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.40206639526766 | bayes_pls_golite062009 |
| transcription factor binding | 0.78051974537344 | bayes_pls_golite062009 |
| protein binding | 0.753698599635855 | bayes_pls_golite062009 |
