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Protein Overview: PUB23_ARATH

General Information:
Name(s) found: PUB23_ARATH [Swiss-Prot]
Description(s) found:
Found 12 descriptions.
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  • E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana GN=PUB23 PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 411 amino acids

    Gene Ontology:
    Cellular Component: cytosol [IDA]
    Biological Process: respiratory burst involved in defense response [IGI]
    response to chitin [IEP]
    defense response [IGI]
    response to water deprivation [IMP]
    protein ubiquitination [IDA]
    protein autoubiquitination [IDA]
    Molecular Function: ubiquitin-protein ligase activity [IGI]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGGIMDEEI EIPPFFLCPI SLEIMKDPVI VSTGITYDRD SIEKWLFAGK KNSCPVTKQD  60
   61 ITDADLTPNH TLRRLIQSWC TLNASYGVER IPTPRPPICK SEIEKLIRDS ASSHENQVKC 120
  121 LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN 180
  181 LLNNKKDNNI VKSLTKIMQR GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL 240
  241 DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV 300
  301 LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML 360
  361 QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC LPKNMILAYP C

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..84] PSI-BLAST 11.522879 NMR solution structure of the U box domain from AtPUB14, an armadillo repeat containing protein from Arabidopsis thaliana
    2 View Details [85..198] FFAS03 2.16 Crystal structure of the exportin Cse1p complexed with its cargo ( Kap60p) and RanGTP
    3 View Details [199..411] PSI-BLAST 37.30103 Crystal Structure of Yeast Karyopherin (Importin) alpha in complex with a Nup2p N-terminal fragment

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.0938889867773109 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle