| Protein: | PUB23_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 411 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PUB23_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
163.0 | [0..6] | [411..1] |
|
Region A: Residues: [1-84] |
1 11 21 31 41 51
| | | | | |
1 MSGGIMDEEI EIPPFFLCPI SLEIMKDPVI VSTGITYDRD SIEKWLFAGK KNSCPVTKQD 60
61 ITDADLTPNH TLRRLIQSWC TLNA
|
| Detection Method: |  |
| Confidence: | 11.522879 |
| Match: | 1t1hA |
| Description: | NMR solution structure of the U box domain from AtPUB14, an armadillo repeat containing protein from Arabidopsis thaliana |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.0938889867773109 | bayes_pls_golite062009 |
|
Region A: Residues: [85-198] |
1 11 21 31 41 51
| | | | | |
1 SYGVERIPTP RPPICKSEIE KLIRDSASSH ENQVKCLKRL RQIVSENATN KRCLEAAGVP 60
61 EFLANIVSND SENGSLTDEA LNLLYHLETS ETVLKNLLNN KKDNNIVKSL TKIM
|
| Detection Method: | |
| Confidence: | 2.16 |
| Match: | 1wa5B |
| Description: | Crystal structure of the exportin Cse1p complexed with its cargo ( Kap60p) and RanGTP |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [199-411] |
1 11 21 31 41 51
| | | | | |
1 QRGMYESRVY ATLLLKNILE VADPMQSMTL KPEVFTEVVQ ILDDRISQKA TKAAMHILVN 60
61 ICPWGRNRHK AVEAGVISVI IELLMDESFT SERRGPEMAM VVLDLLCQCA EGRAEFLNHG 120
121 AAIAVVCKKI LRVSQTASDR AVRVLLSVGR FCATPALLHE MLQLGVVAKL CLVLQVSCGG 180
181 KTKEKAKELL KLHARVWKDS PCLPKNMILA YPC
|
| Detection Method: | |
| Confidence: | 37.30103 |
| Match: | 1un0A |
| Description: | Crystal Structure of Yeast Karyopherin (Importin) alpha in complex with a Nup2p N-terminal fragment |
Matching Structure (courtesy of the PDB): |
|
