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Protein Overview: gi|125606491, gi...

General Information:
Name(s) found: gi|52076080 [NCBI NR]
gi|32526670 [NCBI NR]
gi|18146837 [NCBI NR]
gi|125606491 [NCBI NR]
gi|115480447 [NCBI NR]
gi|113632050 [NCBI NR]
Description(s) found:
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  • gi|52076080|dbj|BAD46593.1| putative nuclear antigen 21D7 [Oryza sativa Japonica Group] [NCBI NR]
  • gi|32526670|dbj|BAC79193.1| putative 26S proteasome non-ATPase regulatory subunit 3 [Oryza sativa Japonica Group] [NCBI NR]
  • gi|18146837|dbj|BAB82474.1| 21D7 [Oryza sativa Japonica Group] [NCBI NR]
  • gi|125606491|gb|EAZ45527.1| hypothetical protein OsJ_30188 [Oryza sativa Japonica Group] [NCBI NR]
  • gi|115480447|ref|NP_001063817.1| Os09g0541900 [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|113632050|dbj|BAF25731.1| Os09g0541900 [Oryza sativa Japonica Group] [NCBI NR]
  • putative 26S proteasome non-ATPase regulatory subunit 3 [Oryza sativa (japonica cultivar-group)]gi|52076080|dbj|BAD46593.1| putative nuclear antigen 21D7 [Oryza sativa (japonica cultivar-group)]gi|18146837|dbj|BAB82474.1| 21D7 [Oryza sativa (japonica cu [nrdb_11152004_Chlamydomonas]
  • 21D7 [Oryza sativa (japonica cultivar-group)] [nr-271106-contam.fasta]
  • putative 26S proteasome non-ATPase regulatory subunit 3 [Oryza sativa (japonica cultivar-group)] [nr-271106-contam.fasta]
  • Os09g0541900 [Oryza sativa (japonica cultivar-group)] [nr-271106-contam.fasta]
  • putative nuclear antigen 21D7 [Oryza sativa (japonica cultivar-group)] [nr-271106-contam.fasta]
    • Organism: Oryza sativa Japonica Group
    Length: 487 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPEDVEMNDS QPQPAAAPPP AASTLQHLKE IASVIEAGSL TKEVRRISRA VRLTVALRRR  60
   61 LAARDVAAFL AFALPHSSEA FARLSSLLPK EDGSEMDVDL AAPAAQVSIK HGLPEIEIYC 120
  121 YLLVLIFLID NKKYDEAKAC ASASITRLKN LNRRTVDVLA SRVFTYYSYV HELTSSLAEI 180
  181 RGTLLALHRM ATLHRDELGQ ETLLNLLLRN YLHYNLYDQA EKLRSKAPRF EAHSNQQFCR 240
  241 YLFYLGKIRT IQLEYTDAKE SLLQAARKAP TTARGFRVQC NKWAIIVRLL LGEIPERTVF 300
  301 MQKGMKAALA PYFELTNAVR VGDLELFRAV AEKFASTFSA DRTRNLIVRL RHNVIRTGLR 360
  361 NISISYSRIS LADIAKKLRL DSENPVADAE SIVAKAIRDG AIDATIDHAN GWMVSKETGD 420
  421 VYSTNEPQIA FNSRIAFCLN MHNEAVKALR FPPNSHKEKE SAEKRRERLQ QEEELAKHMA 480
  481 EEDDDDF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..340] FFAS03 0.983 Transcription factor MalT domain III
    2 View Details [341..421] PSI-BLAST 8.0 Solution structure of the PCI domain
    3 View Details [422..487] Pfam 42.259637 No description for PF08375.2 was found. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • hydrolase activity
    		•  2.802999698299 bayes_pls_golite062009
  • binding
    		•  1.6263282952649 bayes_pls_golite062009
  • protein binding
    		•  0.816793912043238 bayes_pls_golite062009
  • ubiquitin-protein ligase activity
    		•  0.499034250223658 bayes_pls_golite062009
  • small conjugating protein ligase activity
    		•  0.447205684237625 bayes_pls_golite062009
    2
    Term Confidence Notes
  • nucleic acid binding
    		•  2.71882000473688 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.64477330026871 bayes_pls_golite062009
  • DNA binding
    		•  2.61833240701458 bayes_pls_golite062009
  • binding
    		•  2.50656989750917 bayes_pls_golite062009
  • hydrolase activity
    		•  2.30467124306022 bayes_pls_golite062009
  • transcription factor activity
    		•  1.86085059700527 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.66129822977065 bayes_pls_golite062009
  • transcription activator activity
    		•  0.45309092317356 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.339168606666169 bayes_pls_golite062009
  • structural molecule activity
    		•  0.272316540117209 bayes_pls_golite062009
  • ubiquitin-protein ligase activity
    		•  0.136726704233672 bayes_pls_golite062009
  • small conjugating protein ligase activity
    		•  0.118016217031359 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  0.0912115683429473 bayes_pls_golite062009
  • protein binding
    		•  0.057263185425224 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.75

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle