| Protein: | gi|125606491, gi... |
| Organism: | Oryza sativa Japonica Group |
| Length: | 487 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|125606491, gi....
| Description | E-value | Query Range |
Subject Range |
|
|
373.0 | [0..1] | [487..1] |
|
Region A: Residues: [1-340] |
1 11 21 31 41 51
| | | | | |
1 MPEDVEMNDS QPQPAAAPPP AASTLQHLKE IASVIEAGSL TKEVRRISRA VRLTVALRRR 60
61 LAARDVAAFL AFALPHSSEA FARLSSLLPK EDGSEMDVDL AAPAAQVSIK HGLPEIEIYC 120
121 YLLVLIFLID NKKYDEAKAC ASASITRLKN LNRRTVDVLA SRVFTYYSYV HELTSSLAEI 180
181 RGTLLALHRM ATLHRDELGQ ETLLNLLLRN YLHYNLYDQA EKLRSKAPRF EAHSNQQFCR 240
241 YLFYLGKIRT IQLEYTDAKE SLLQAARKAP TTARGFRVQC NKWAIIVRLL LGEIPERTVF 300
301 MQKGMKAALA PYFELTNAVR VGDLELFRAV AEKFASTFSA
|
| Detection Method: |  |
| Confidence: | 0.983 |
| Match: | 1hz4A |
| Description: | Transcription factor MalT domain III |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| hydrolase activity | 2.802999698299 | bayes_pls_golite062009 |
| binding | 1.6263282952649 | bayes_pls_golite062009 |
| protein binding | 0.816793912043238 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 0.499034250223658 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 0.447205684237625 | bayes_pls_golite062009 |
|
Region A: Residues: [341-421] |
1 11 21 31 41 51
| | | | | |
1 DRTRNLIVRL RHNVIRTGLR NISISYSRIS LADIAKKLRL DSENPVADAE SIVAKAIRDG 60
61 AIDATIDHAN GWMVSKETGD V
|
| Detection Method: | |
| Confidence: | 8.0 |
| Match: | 1ufmA |
| Description: | Solution structure of the PCI domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| nucleic acid binding | 2.71882000473688 | bayes_pls_golite062009 |
| transcription regulator activity | 2.64477330026871 | bayes_pls_golite062009 |
| DNA binding | 2.61833240701458 | bayes_pls_golite062009 |
| binding | 2.50656989750917 | bayes_pls_golite062009 |
| hydrolase activity | 2.30467124306022 | bayes_pls_golite062009 |
| transcription factor activity | 1.86085059700527 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.66129822977065 | bayes_pls_golite062009 |
| transcription activator activity | 0.45309092317356 | bayes_pls_golite062009 |
| transcription repressor activity | 0.339168606666169 | bayes_pls_golite062009 |
| structural molecule activity | 0.272316540117209 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 0.136726704233672 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 0.118016217031359 | bayes_pls_golite062009 |
| structural constituent of ribosome | 0.0912115683429473 | bayes_pls_golite062009 |
| protein binding | 0.057263185425224 | bayes_pls_golite062009 |
|
Region A: Residues: [422-487] |
1 11 21 31 41 51
| | | | | |
1 YSTNEPQIAF NSRIAFCLNM HNEAVKALRF PPNSHKEKES AEKRRERLQQ EEELAKHMAE 60
61 EDDDDF
|
| Detection Method: | |
| Confidence: | 42.259637 |
| Match: | PF08375.2 |
| Description: | No description for PF08375.2 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
