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Protein Overview: gi|190407869

General Information:
Name(s) found: gi|190407869 [NCBI NR]
Description(s) found:
  • gi|190407869|gb|EDV11134.1| RNA polymerase II Elongator subunit [Saccharomyces cerevisiae RM11-1a] [NCBI NR]
    • Organism: Saccharomyces cerevisiae RM11-1a
    Length: 557 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARHGKGPKT NKKKLAPEKE RFIQCCADIT LELTDSLTSG TTREINLNGL ITKYSKKYKL  60
   61 KQQPRLTDII NSIPDQYKKY LLPKLKAKPV RTASGIAVVA VMCKPHRCPH IAYTGNICVY 120
  121 CPGGPDSDFE YSTQSYTGYE PTSMRAIRAR YDPYEQARGR VEQLKQLGHS IDKVEYVLMG 180
  181 GTFMSLPKEY REDFIVKLHN ALSGFNGNDI DEAILYSQQS LTKCVGITIE TRPDYCTQTH 240
  241 LDDMLKYGCT RLEIGVQSLY EDVARDTNRG HTVRSVCETF AVSKDAGYKV VSHMMPDLPN 300
  301 VGMERDIEQF KEYFENPDFR TDGLKIYPTL VIRGTGLYEL WKTGRYKSYS ANALVDLVAR 360
  361 ILALVPPWTR IYRVQRDIPM PLVTSGVDNG NLRELALARM KDLGTTCRDV RTREVGIQEV 420
  421 HHKVQPDQVE LIRRDYYANG GWETFLSYED PKKDILIGLL RLRKASKKYT YRKEFTSQRT 480
  481 SIVRELHVYG SVVPLHSRDP RKFQHQGFGT LLMEEAERIA KEEHGSEKIS VISGVGVRNY 540
  541 YGKLGYELDG PYMSKRI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..423] MSA 126.850997 View MSA. No confident structure predictions are available.
    2 View Details [424..557] Pfam 6.508638 Acetyltransferase (GNAT) family No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.62614606868017 bayes_pls_golite062009
  • catalytic activity
    		•  1.48331922124015 bayes_pls_golite062009
  • transferase activity
    		•  1.38870107531698 bayes_pls_golite062009
  • protein binding
    		•  0.374124957429525 bayes_pls_golite062009
    2
    Term Confidence Notes
  • transferase activity
    		•  3.26226130947208 bayes_pls_golite062009
  • N-acyltransferase activity
    		•  3.22332766762816 bayes_pls_golite062009
  • N-acetyltransferase activity
    		•  3.16285222477063 bayes_pls_golite062009
  • histone acetyltransferase activity
    		•  3.09883679214009 bayes_pls_golite062009
  • lysine N-acetyltransferase activity
    		•  3.09883679214009 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  3.06288276492113 bayes_pls_golite062009
  • acetyltransferase activity
    		•  2.29329191833529 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.26346740872821 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.14720849412601 bayes_pls_golite062009
  • transferase activity, transferring acyl groups
    		•  2.05664878927078 bayes_pls_golite062009
  • catalytic activity
    		•  1.823104805379 bayes_pls_golite062009
  • binding
    		•  1.30356860355657 bayes_pls_golite062009
  • transcription coactivator activity
    		•  1.05620338082006 bayes_pls_golite062009
  • transcription factor binding
    		•  0.999468823887739 bayes_pls_golite062009
  • transferase activity, transferring acyl groups other than amino-acyl groups
    		•  0.934738369878547 bayes_pls_golite062009
  • acyltransferase activity
    		•  0.930618573930377 bayes_pls_golite062009
  • transcription activator activity
    		•  0.800725992277502 bayes_pls_golite062009
    		• 0.720242802910078 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.60912193595326 bayes_pls_golite062009
  • RNA binding
    		•  0.314555310175452 bayes_pls_golite062009
  • transcription cofactor activity
    		•  0.207688916644661 bayes_pls_golite062009
  • protein binding
    		•  0.116359302536336 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle