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Protein Overview: gi|224097140, gi...

General Information:
Name(s) found: gi|224097140 [NCBI NR]
gi|224093720 [NCBI NR]
gi|224085804 [NCBI NR]
gi|224081102 [NCBI NR]
gi|224066983 [NCBI NR]
gi|224062043 [NCBI NR]
gi|222857151 [NCBI NR]
gi|222855743 [NCBI NR]
gi|222853751 [NCBI NR]
gi|222852864 [NCBI NR]
gi|222844037 [NCBI NR]
gi|222842452 [NCBI NR]
gi|118485975 [NCBI NR]
gi|118485551 [NCBI NR]
gi|118485336 [NCBI NR]
Description(s) found:
Found 15 descriptions.
SHOW ALL
  • gi|224097140|ref|XP_002310848.1| histone H3 [Populus trichocarpa] [NCBI NR]
  • gi|224093720|ref|XP_002309961.1| histone H3 [Populus trichocarpa] [NCBI NR]
  • gi|224085804|ref|XP_002307702.1| histone H3 [Populus trichocarpa] [NCBI NR]
  • gi|224081102|ref|XP_002306294.1| histone H3 [Populus trichocarpa] [NCBI NR]
  • gi|224066983|ref|XP_002302311.1| histone H3 [Populus trichocarpa] [NCBI NR]
  • gi|224062043|ref|XP_002300726.1| histone H3 [Populus trichocarpa] [NCBI NR]
  • gi|222857151|gb|EEE94698.1| histone H3 [Populus trichocarpa] [NCBI NR]
  • gi|222855743|gb|EEE93290.1| histone H3 [Populus trichocarpa] [NCBI NR]
  • gi|222853751|gb|EEE91298.1| histone H3 [Populus trichocarpa] [NCBI NR]
  • gi|222852864|gb|EEE90411.1| histone H3 [Populus trichocarpa] [NCBI NR]
  • gi|222844037|gb|EEE81584.1| histone H3 [Populus trichocarpa] [NCBI NR]
  • gi|222842452|gb|EEE79999.1| histone H3 [Populus trichocarpa] [NCBI NR]
  • gi|118485975|gb|ABK94832.1| unknown [Populus trichocarpa] [NCBI NR]
  • gi|118485551|gb|ABK94627.1| unknown [Populus trichocarpa] [NCBI NR]
  • gi|118485336|gb|ABK94527.1| unknown [Populus trichocarpa] [NCBI NR]
    • Organism: Populus trichocarpa
    Length: 136 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARTKQTARK STGGKAPRKQ LATKAARKSA PTTGGVKKPH RYRPGTVALR EIRKYQKSTE  60
   61 LLIRKLPFQR LVREIAQDFK TDLRFQSHAV LALQEAAEAY LVGLFEDTNL CAIHAKRVTI 120
  121 MPKDIQLARR IRGERA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..136] PSI-BLAST 57.69897 Crystal structure of the nucleosome core particle containing the histone domain of macroH2A

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • general RNA polymerase II transcription factor activity
    		•  6.43582244485566 bayes_pls_golite062009
  • DNA binding
    		•  4.49118409263799 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.35201412176948 bayes_pls_golite062009
  • transcription regulator activity
    		•  4.08606081850613 bayes_pls_golite062009
  • binding
    		•  3.27510691458843 bayes_pls_golite062009
  • centromeric DNA binding
    		•  2.60445660474495 bayes_pls_golite062009
  • transcription factor activity
    		•  2.51581622888695 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  2.38228606466152 bayes_pls_golite062009
  • transcription repressor activity
    		•  2.3574713307436 bayes_pls_golite062009
  • transcription initiation factor activity
    		•  1.57176056919918 bayes_pls_golite062009
  • transcription corepressor activity
    		•  1.30859203490073 bayes_pls_golite062009
  • histone acetyltransferase activity
    		•  1.30425023787663 bayes_pls_golite062009
  • lysine N-acetyltransferase activity
    		•  1.30425023787663 bayes_pls_golite062009
  • transcription activator activity
    		•  1.25487495162413 bayes_pls_golite062009
  • transcription factor binding
    		•  1.15204005455906 bayes_pls_golite062009
  • transcription coactivator activity
    		•  1.1297723528047 bayes_pls_golite062009
  • protein binding
    		•  1.07873333188144 bayes_pls_golite062009
  • transcription cofactor activity
    		•  1.01502031330902 bayes_pls_golite062009
  • histone binding
    		•  0.218942897869955 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.0852726470007639 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle