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Protein Overview: gi|190407746

General Information:
Name(s) found: gi|190407746 [NCBI NR]
Description(s) found:
  • gi|190407746|gb|EDV11011.1| ribosome biogenesis protein BMS1 [Saccharomyces cerevisiae RM11-1a] [NCBI NR]
    • Organism: Saccharomyces cerevisiae RM11-1a
    Length: 1183 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQSNKQHRK AKEKNTAKKK LHTQGHNAKA FAVAAPGKMA RTMQRSSDVN ERKLHVPMVD  60
   61 RTPEDDPPPF IVAVVGPPGT GKTTLIRSLV RRMTKSTLND IQGPITVVSG KHRRLTFLEC 120
  121 PADDLNAMID IAKIADLVLL LIDGNFGFEM ETMEFLNIAQ HHGMPRVLGV ATHLDLFKSQ 180
  181 STLRASKKRL KHRFWTEVYQ GAKLFYLSGV INGRYPDREI LNLSRFISVM KFRPLKWRNE 240
  241 HPYMLADRFT DLTHPELIET QGLQIDRKVA IYGYLHGTPL PSAPGTRVHI AGVGDFSVAQ 300
  301 IEKLPDPCPT PFYQQKLDDF EREKMKEEAK ANGEITTAST TRRRKRLDDK DKLIYAPMSD 360
  361 VGGVLMDKDA VYIDIGKKNE EPSFVPGQER GEGEKLMTGL QSVEQSIAEK FDGVGLQLFS 420
  421 NGTELHEVAD HEGMDVESGE ESIEDDEGKS KGRTSLRKPR IYGKPVQEED ADIDNLPSDE 480
  481 EPYTNDDDVQ DSEPRMVEID FNNTGEQGAE KLALETDSEF EESEDEFSWE RTAANKLKKT 540
  541 ESKKRTWNIG KLIYMDNISP EECIRRWRGE DDDSKDESDI EEDVDDDFFR KKDGTVTKEG 600
  601 NKDHAVDLEK FVPYFDTFEK LAKKWKSVDA IKERFLGAGI LGNDNKTKSD SNEGGEELYG 660
  661 DFEDLEDGNP SEQAEDNSDK ESEDEDENED TNGDDDNSFT NFDAEEKKDL TMEQEREMNA 720
  721 AKKEKLRAQF EIEEGENFKE DDENNEYDTW YELQKAKISK QLEINNIEYQ EMTPEQRQRI 780
  781 EGFKAGSYVR IVFEKVPMEF VKNFNPKFPI VMGGLLPTEI KFGIVKARLR RHRWHKKILK 840
  841 TNDPLVLSLG WRRFQTLPIY TTTDSRTRTR MLKYTPEHTY CNAAFYGPLC SPNTPFCGVQ 900
  901 IVANSDTGNG FRIAATGIVE EIDVNIEIVK KLKLVGFPYK IFKNTAFIKD MFSSAMEVAR 960
  961 FEGAQIKTVS GIRGEIKRAL SKPEGHYRAA FEDKILMSDI VILRSWYPVR VKKFYNPVTS1020
 1021 LLLKEKTEWK GLRLTGQIRA AMNLETPSNP DSAYHKIERV ERHFNGLKVP KAVQKELPFK1080
 1081 SQIHQMKPQK KKTYMAKRAV VLGGDEKKAR SFIQKVLTIS KAKDSKRKEQ KASQRKERLK1140
 1141 KLAKMEEEKS QRDKEKKKEY FAQNGKRTTM GGDDESRPRK MRR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..174] MSA 2.253997 View MSA. No confident structure predictions are available.
    2 View Details [175..329] deduced N/A No confident structure predictions are available.
    3 View Details [330..693] PSI-BLAST 2.221849 Heavy meromyosin subfragment
    4 View Details [694..982] MSA 2.429937 View MSA. No confident structure predictions are available.
    5 View Details [983..1096] MSA 1.027985 View MSA. No confident structure predictions are available.
    6 View Details [1097..1183] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  2.43368780168847 bayes_pls_golite062009
  • motor activity
    		•  1.66001460462062 bayes_pls_golite062009
  • RNA binding
    		•  1.64085862208961 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  1.58614825683861 bayes_pls_golite062009
  • microtubule motor activity
    		•  1.51492936494661 bayes_pls_golite062009
    		• 1.40793830270505 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.38653949159874 bayes_pls_golite062009
  • RNA helicase activity
    		•  1.19425264627559 bayes_pls_golite062009
  • RNA-dependent ATPase activity
    		•  1.16223608981327 bayes_pls_golite062009
  • ATP-dependent RNA helicase activity
    		•  1.13639104386803 bayes_pls_golite062009
  • DNA binding
    		•  1.10928092522596 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.02050154675732 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  1.01452238670999 bayes_pls_golite062009
  • catalytic activity
    		•  0.942640875796745 bayes_pls_golite062009
  • structural molecule activity
    		•  0.675553718290749 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  0.661839640945953 bayes_pls_golite062009
  • hydrolase activity
    		•  0.59573424609875 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  0.561205936947495 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
    		•  0.561205936947495 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
    		•  0.560259345938113 bayes_pls_golite062009
  • tubulin binding
    		•  0.486290099514671 bayes_pls_golite062009
  • protein binding
    		•  0.409258528033042 bayes_pls_golite062009
  • helicase activity
    		•  0.389068221426991 bayes_pls_golite062009
  • microtubule binding
    		•  0.379674198622762 bayes_pls_golite062009
  • actin binding
    		•  0.332654682400232 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  0.191068703418711 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  0.188196054823553 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  0.184212465168396 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.147137984163853 bayes_pls_golite062009
  • transcription factor activity
    		•  0.0836981407579493 bayes_pls_golite062009
  • microfilament motor activity
    		•  0.0684601046679916 bayes_pls_golite062009
  • ATP-dependent helicase activity
    		•  0.0655945570748848 bayes_pls_golite062009
  • purine NTP-dependent helicase activity
    		•  0.0655945570748848 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.
    6 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle