Protein Overview: gi|220943410, gi...

General Information:
Name(s) found:	gi\|220953372 [NCBI NR] gi\|220943410 [NCBI NR]
Description(s) found: Found 2 descriptions. SHOW ALL	gi\|220953372\|gb\|ACL89229.1\| sc-PA [synthetic construct] [NCBI NR] gi\|220943410\|gb\|ACL84248.1\| sc-PA [synthetic construct] [NCBI NR]
Organism:	synthetic construct
Length:	345 amino acids
Gene Ontology:
Cellular Component:	NONE FOUND
Biological Process:	NONE FOUND
Molecular Function:	NONE FOUND

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNNNNTTKS TTMSSSVLST NETFPTTINS ATKIFRYQHI MPAPSPLIPG GNQNQPAGTM  60
   61 PIKTRKYTPR GMALTRCSES VSSLSPGSSP APYNVDQSQS VQRRNARERN RVKQVNNSFA 120
  121 RLRQHIPQSI ITDLTKGGGR GPHKKISKVD TLRIAVEYIR RLQDLVDDLN GGSNIGANNA 180
  181 VTQLQLCLDE SSSHSSSSST CSSSGHNTYY QNTISVSPLQ QQQQLQRQQF NHQPLTALSL 240
  241 NTNLVGTSVP GGDAGCVSTS KNQQTCHSPT SSFNSSMSFD SGTYEGVPQQ ISTHLDRLDH 300
  301 LDNELHTHSQ LQLKFEPYEH FQLDEEDCTP DDEEILDYIS LWQEQ

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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No microscopy data found in the PDR for this protein.

Protein Structure Data

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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..89]	deduced	N/A	No confident structure predictions are available.
2	View Details	[90..186]	PSI-BLAST	12.30103	SREBP-1a
3	View Details	[187..345]	MSA	2.296991	View MSA. No confident structure predictions are available.

Functions predicted (by domain):

#

Gene Ontology predictions

1

No functions predicted.

2

Term	Confidence	Notes
transcription regulator activity	5.38658950816179	bayes_pls_golite062009
DNA binding	5.18654839258297	bayes_pls_golite062009
nucleic acid binding	5.05768805749761	bayes_pls_golite062009
transcription factor activity	4.78039531631248	bayes_pls_golite062009
binding	3.81829206350975	bayes_pls_golite062009
RNA polymerase II transcription factor activity	3.39500382187264	bayes_pls_golite062009
transcription factor binding	2.61163564741984	bayes_pls_golite062009
transcription activator activity	2.5495467409976	bayes_pls_golite062009
RNA polymerase II transcription factor activity, enhancer binding	2.42306484786159	bayes_pls_golite062009
sequence-specific DNA binding	2.31910036997977	bayes_pls_golite062009
protein binding	1.59929864805879	bayes_pls_golite062009
transcription cofactor activity	1.52770895937238	bayes_pls_golite062009
transcription repressor activity	0.955588849035129	bayes_pls_golite062009
promoter binding	0.8576109846276	bayes_pls_golite062009
transcription corepressor activity	0.801830750183111	bayes_pls_golite062009
transcription coactivator activity	0.3513586903977	bayes_pls_golite062009

3

No functions predicted.

Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

Philius Transmembrane Prediction:

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.92

Source: Reynolds et al. (2008)

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle