Protein Overview: gi|221315673

General Information:
Name(s) found:	gi\|221315673 [NCBI NR]
Description(s) found:	gi\|221315673\|ref\|ZP_03597478.1\| transcriptional regulator [Bacillus subtilis subsp. subtilis str. NCIB 3610] [NCBI NR]
Organism:	Bacillus subtilis subsp. subtilis str. NCIB 3610
Length:	340 amino acids
Gene Ontology:
Cellular Component:	NONE FOUND
Biological Process:	NONE FOUND
Molecular Function:	NONE FOUND

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNQLIQAQKK LLPDLLLVMQ KRFEILQYIR LTEPIGRRSL SASLGISERV LRGEVQFLKE  60
   61 QNLVDIKTNG MTLTEEGYEL LSVLEDTMKD VLGLTLLEKT LKERLNLKDA IIVSGDSDQS 120
  121 PWVKKEMGRA AVACMKKRFS GKNIVAVTGG TTIEAVAEMM TPDSKNRELL FVPARGGLGE 180
  181 DVKNQANTIC AHMAEKASGT YRLLFVPGQL SQGAYSSIIE EPSVKEVLNT IKSASMLVHG 240
  241 IGEAKTMAQR RNTPLEDLKK IDDNDAVTEA FGYYFNADGE VVHKVHSVGM QLDDIDAIPD 300
  301 IIAVAGGSSK AEAIEAYFKK PRNTVLVTDE GAAKKLLRDE

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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No microscopy data found in the PDR for this protein.

Protein Structure Data

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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..104]	PSI-BLAST	5.522879	LprA
2	View Details	[105..340]	PSI-BLAST	41.39794	No description for 2okgA was found.

Functions predicted (by domain):

#

Gene Ontology predictions

1

Term	Confidence	Notes
transcription regulator activity	3.98990675336286	bayes_pls_golite062009
DNA binding	3.4273272886116	bayes_pls_golite062009
nucleic acid binding	3.38054693035398	bayes_pls_golite062009
transcription factor activity	2.80110428028438	bayes_pls_golite062009
binding	2.18911933843505	bayes_pls_golite062009
transcription activator activity	0.53294679084865	bayes_pls_golite062009
sequence-specific DNA binding	0.53285802828572	bayes_pls_golite062009
transcription repressor activity	0.513853050429619	bayes_pls_golite062009
protein binding	0.035220363090062	bayes_pls_golite062009

2

Term	Confidence	Notes
intramolecular oxidoreductase activity, interconverting aldoses and ketoses	2.23796402493477	bayes_pls_golite062009
ribose-5-phosphate isomerase activity	1.8706764549668	bayes_pls_golite062009
intramolecular oxidoreductase activity	1.76533950728927	bayes_pls_golite062009
catalytic activity	1.68776709414398	bayes_pls_golite062009
nucleic acid binding	0.965520574888216	bayes_pls_golite062009
transcription regulator activity	0.769423781192988	bayes_pls_golite062009
isomerase activity	0.61588631681492	bayes_pls_golite062009
DNA binding	0.223734115868557	bayes_pls_golite062009
6-phosphogluconolactonase activity	0.219352404564701	bayes_pls_golite062009
binding	0.199466104892993	bayes_pls_golite062009

Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

Philius Transmembrane Prediction:

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.98

Source: Reynolds et al. (2008)

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle