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Protein Overview: gi|40889974, gi|...

General Information:
Name(s) found: gi|40889975 [NCBI NR]
gi|40889974 [NCBI NR]
Description(s) found:
Found 5 descriptions.
SHOW ALL
  • gi|40889975|pdb|1VI2|B Chain B, Crystal Structure Of Shikimate-5-Dehydrogenase With Nad [NCBI NR]
  • gi|40889974|pdb|1VI2|A Chain A, Crystal Structure Of Shikimate-5-Dehydrogenase With Nad [NCBI NR]
    • Organism: Escherichia coli
    Length: 300 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 XSLDVTAKYE LIGLXAYPIR HSLSPEXQNK ALEKAGLPFT YXAFEVDNDS FPGAIEGLKA  60
   61 LKXRGTGVSX PNKQLACEYV DELTPAAKLV GAINTIVNDD GYLRGYNTDG TGHIRAIKES 120
  121 GFDIKGKTXV LLGAGGASTA IGAQGAIEGL KEIKLFNRRD EFFDKALAFA QRVNENTDCV 180
  181 VTVTDLADQQ AFAEALASAD ILTNGTKVGX KPLENESLVN DISLLHPGLL VTECVYNPHX 240
  241 TKLLQQAQQA GCKTIDGYGX LLWQGAEQFT LWTGKDFPLE YVKQVXGFGA EGGSHHHHHH 300
  301

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Noble WS, et al. (2009) Manuscript in preparation. gi|189095939, gi... gi|40889974, gi|...

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..300] PSI-BLAST 71.0 Crystal structure of shikimate-5-dehydrogenase with NAD

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • shikimate 5-dehydrogenase activity
    		•  3.40568087442781 bayes_pls_golite062009
  • malate dehydrogenase activity
    		•  3.18316725684556 bayes_pls_golite062009
  • malic enzyme activity
    		•  2.5718745582089 bayes_pls_golite062009
  • oxidoreductase activity
    		•  2.15129810845685 bayes_pls_golite062009
  • catalytic activity
    		•  2.0643953589843 bayes_pls_golite062009
  • oxidoreductase activity, acting on CH-OH group of donors
    		•  1.43144163429682 bayes_pls_golite062009
  • malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity
    		•  0.858327241653065 bayes_pls_golite062009
  • fatty acid synthase activity
    		•  0.714637370305282 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
    		•  0.39426299750207 bayes_pls_golite062009
  • 3-oxoacyl-[acyl-carrier-protein] reductase activity
    		•  0.192594057004213 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.93

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle