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Protein Overview: gi|42571983

General Information:
Name(s) found: gi|42571983 [NCBI NR]
Description(s) found:
Found 8 descriptions.
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  • gi|42571983|ref|NP_974082.1| protease-associated (PA) domain-containing protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 540 amino acids

    Gene Ontology:
    Cellular Component: endosome [IDA]
    Biological Process: proteolysis [ISS]
    Molecular Function: aspartic-type endopeptidase activity [IEA]
    peptidase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSLRFLRIL LLSSSILLLS LRSTVTAGDI VHQDNLAPKK PGCENDFVLV KVQTWIDGVE  60
   61 NEEFVGVGAR FGKRIVSKEK NANQTHLVFA NPRDSCTPLK NKLSGDVVIV ERGNCRFTAK 120
  121 ANNAEAAGAS ALLIINNQKE LYKMVCEPDE TDLDIQIPAV MLPQDAGASL QKMLANSSKV 180
  181 SAQLYSPRRP AVDVAEVFLW LMAIGTILCA SYWSAWSARE AAIEHDKLLK DAIDEIPNTN 240
  241 DGGSGVVEIN SISAIFFVVL ASGFLVILYK LMSYWFVELL VVVFCIGGVE GLQTCLVALL 300
  301 SRWFQRAADT YVKVPFLGPI SYLTLAVSPF CIVFAVLWAV YRVHSFAWIG QDVLGIALII 360
  361 TVLQIVHVPN LKVGTVLLSC AFLYDIFWVF VSKKLFHESV MIVVTRGDKS GEDGIPMLLK 420
  421 IPRMFDPWGG YSIIGFGDIL LPGLLIAFAL RYDWLANKTL RTGYFIWAMV AYGLGLLITY 480
  481 VALNLMDGHG QPALLYIVPF TLGTMLTLAR KRDDLWILWT KGEPERACPH HVRLEQCSEK 540
  541

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..250] PSI-BLAST 18.69897 Crystal Structure of Psychrophilic Subtilisin-like Protease Apa1 from Antarctic Psychrotroph Pseudoalteromonas sp. AS-11
    2 View Details [251..447] MSA 4.317969 View MSA. No confident structure predictions are available.
    3 View Details [448..540] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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