YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42571983
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	27	0.99
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	196	0.99
Transmembrane Helix	197	216	0.93
Cytoplasmic	217	251	0.92
Transmembrane Helix	252	272	0.89
Non-Cytoplasmic	273	278	0.75
Transmembrane Helix	279	300	0.94
Cytoplasmic	301	317	0.83
Transmembrane Helix	318	340	0.90
Non-Cytoplasmic	341	346	0.79
Transmembrane Helix	347	366	0.93
Cytoplasmic	367	372	0.78
Transmembrane Helix	373	392	0.90
Non-Cytoplasmic	393	430	0.94
Transmembrane Helix	431	452	0.90
Cytoplasmic	453	462	0.85
Transmembrane Helix	463	483	0.95
Non-Cytoplasmic	484	491	0.76
Transmembrane Helix	492	509	0.96
Cytoplasmic	510	540	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSLRFLRIL LLSSSILLLS LRSTVTAGDI VHQDNLAPKK PGCENDFVLV KVQTWIDGVE  60
   61 NEEFVGVGAR FGKRIVSKEK NANQTHLVFA NPRDSCTPLK NKLSGDVVIV ERGNCRFTAK 120
  121 ANNAEAAGAS ALLIINNQKE LYKMVCEPDE TDLDIQIPAV MLPQDAGASL QKMLANSSKV 180
  181 SAQLYSPRRP AVDVAEVFLW LMAIGTILCA SYWSAWSARE AAIEHDKLLK DAIDEIPNTN 240
  241 DGGSGVVEIN SISAIFFVVL ASGFLVILYK LMSYWFVELL VVVFCIGGVE GLQTCLVALL 300
  301 SRWFQRAADT YVKVPFLGPI SYLTLAVSPF CIVFAVLWAV YRVHSFAWIG QDVLGIALII 360
  361 TVLQIVHVPN LKVGTVLLSC AFLYDIFWVF VSKKLFHESV MIVVTRGDKS GEDGIPMLLK 420
  421 IPRMFDPWGG YSIIGFGDIL LPGLLIAFAL RYDWLANKTL RTGYFIWAMV AYGLGLLITY 480
  481 VALNLMDGHG QPALLYIVPF TLGTMLTLAR KRDDLWILWT KGEPERACPH HVRLEQCSEK 540
  541