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Protein Overview: gi|66792628, gi|...

General Information:
Name(s) found: gi|95147278 [NCBI NR]
gi|66792628 [NCBI NR]
gi|15221913 [NCBI NR]
Description(s) found:
Found 10 descriptions.
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  • gi|95147278|gb|ABF57274.1| At1g48620 [Arabidopsis thaliana] [NCBI NR]
  • gi|66792628|gb|AAY56416.1| At1g48620 [Arabidopsis thaliana] [NCBI NR]
  • gi|15221913|ref|NP_175295.1| HON5 (High Mobility Group Family A 5); DNA binding [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 479 amino acids

    Gene Ontology:
    Cellular Component: nucleus [ISS]
    chloroplast [IDA]
    nucleolus [IDA]
    nucleosome [ISS]
    Biological Process: DNA mediated transformation [IMP]
    nucleosome assembly [ISS]
    Molecular Function: DNA binding [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPSLSATND PHHPPPPQFT SFPPFTNTNP FASPNHPFFT GPTAVAPPNN IHLYQAAPPQ  60
   61 QPQTSPVPPH PSISHPPYSD MICTAIAALN EPDGSSKQAI SRYIERIYTG IPTAHGALLT 120
  121 HHLKTLKTSG ILVMVKKSYK LASTPPPPPP TSVAPSLEPP RSDFIVNENQ PLPDPVLASS 180
  181 TPQTIKRGRG RPPKAKPDVV QPQPLTNGKL TWEQSELPVS RPEEIQIQPP QLPLQPQQPV 240
  241 KRPPGRPRKD GTSPTVKPAA SVSGGVETVK RRGRPPSGRA AGRERKPIVV SAPASVFPYV 300
  301 ANGGVRRRGR PKRVDAGGAS SVAPPPPPPT NVESGGEEVA VKKRGRGRPP KIGGVIRKPM 360
  361 KPMRSFARTG KPVGRPRKNA VSVGASGRQD GDYGELKKKF ELFQARAKDI VIVLKSEIGG 420
  421 SGNQAVVQAI QDLEGIAETT NEPKHMEEVQ LPDEEHLETE PEAEGQGQTE AEAMQEALF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..164] FFAS03 1.55 Histone H5, globular domain
    2 View Details [165..262] deduced N/A No confident structure predictions are available.
    3 View Details [263..479] MSA 1.157996 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.683379929086364 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.16959343932447 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.0949481158963694 bayes_pls_golite062009
  • DNA binding
    		•  0.00746597740509714 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle