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Protein Overview: gi|110743871, gi...

General Information:
Name(s) found: gi|30694642 [NCBI NR]
gi|110743871 [NCBI NR]
Description(s) found:
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  • gi|30694642|ref|NP_851131.1| Toll-Interleukin-Resistance (TIR) domain-containing protein [Arabidopsis thaliana] [NCBI NR]
  • gi|110743871|dbj|BAE99770.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • Toll-Interleukin-Resistance (TIR) domain-containing protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Toll-Interleukin-Resistance (TIR) domain-containing protein, domain signature TIR exists, suggestive of a disease resistance protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | Toll-Interleukin-Resistance (TIR) domain-containing protein | chr5:18156192-18157221 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • hypothetical protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • transmembrane receptor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Toll-Interleukin-Resistance (TIR) domain family protein | chr5:18138965-18139994 FORWARD LENGTH=255 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Putative uncharacterized protein At5g44920 OS=Arabidopsis thaliana GN=At5g44920 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 255 amino acids

    Gene Ontology:
    Cellular Component: endoplasmic reticulum [IDA]
    Biological Process: signal transduction [IEA]
    innate immune response [IEA]
    defense response [ISS]
    Molecular Function: transmembrane receptor activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEQVQEPLS DQVFINFRGD ELREIFVNHL ELQLRNAGIN VFIDTKEQKG RRLQYLFTRI  60
   61 KKSKIALAIF SKRYCESKWC LDELVTMNEQ MKEKKLVVIP IFYNVRSDDV KRAANPDGEG 120
  121 NLDGEFSLPF KQLKQNHAGE PERVEGWERA LRSVTKRIGF SRSNSKYKHD TDFVLDIVKE 180
  181 VKKQLNIPTD NSWSAIGVAF LAITINLIFS FFIAPKYLPD QKFFQTPEWF IGTLAVVLAS 240
  241 WFWYKNNQNK APPPS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..192] PSI-BLAST 20.69897 Toll-like receptor 1, TLR1
    2 View Details [193..255] MSA 47.236997 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.261666574457319 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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