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Protein Overview: gi|42573533

General Information:
Name(s) found: gi|42573533 [NCBI NR]
Description(s) found:
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  • gi|42573533|ref|NP_974863.1| DEG8; peptidase/ serine-type peptidase [Arabidopsis thaliana] [NCBI NR]
  • DegP protease, putative [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 DegP protease [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: DEGP8, DEG8 | DEG8/DEGP8 (DEGP PROTEASE 8); peptidase/ serine-type peptidase/ trypsin | chr5:15960111-15962904 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • protein binding / serine-type endopeptidase/ serine-type peptidase/ trypsin [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: DEGP8, DEG8 | Trypsin family protein with PDZ domain | chr5:15942883-15945676 FORWARD LENGTH=434 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Protease Do-like 8 OS=Arabidopsis thaliana GN=DEG8 PE=2 SV=1 [ARATH-contam.fasta]
  • Isoform of Q9LU10, Protease DEG 8 OS=Arabidopsis thaliana GN=DEG8 PE=4 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 434 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQVIASFCSK PNENEFVGRR QLLSSVCSKI SQGDVVSHPP VSSVKVTQDW KSNLHELAVK  60
   61 SVPSTTRRIL LTSLFMNLCF NPSRYLSALA LGDPSVATVE DVSPTVFPAG PLFPTEGRIV 120
  121 QLFEKNTYSV VNIFDVTLRP QLKMTGVVEI PEGNGSGVVW DGQGYIVTNY HVIGNALSRN 180
  181 PSPGDVVGRV NILASDGVQK NFEGKLVGAD RAKDLAVLKV DAPETLLKPI KVGQSNSLKV 240
  241 GQQCLAIGNP FGFDHTLTVG VISGLNRDIF SQTGVTIGGG IQTDAAINPG NSGGPLLDSK 300
  301 GNLIGINTAI FTQTVLKIVP QLIQFSKVLR AGINIELAPD PVANQLNVRN GALVLQVPGK 360
  361 SLAEKAGLHP TSRGFAGNIV LGDIIVAVDD KPVKNKAELM KILDEYSVGD KVTLKIKRGN 420
  421 EDLELKISLE EKSS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..108] deduced N/A No confident structure predictions are available.
    2 View Details [109..434] PSI-BLAST 58.0 Protease Do (DegP, HtrA), C-terminal domains; Protease Do (DegP, HtrA), catalytic domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • peptidase activity
    		•  4.45528883298499 bayes_pls_golite062009
  • peptidase activity, acting on L-amino acid peptides
    		•  4.08053412162226 bayes_pls_golite062009
  • endopeptidase activity
    		•  3.78841204092284 bayes_pls_golite062009
  • serine-type peptidase activity
    		•  3.58347664461084 bayes_pls_golite062009
  • serine hydrolase activity
    		•  3.58106288341801 bayes_pls_golite062009
  • serine-type endopeptidase activity
    		•  3.36658782366155 bayes_pls_golite062009
  • hydrolase activity
    		•  2.78416408149092 bayes_pls_golite062009
  • catalytic activity
    		•  1.40927913545237 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle