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Protein Overview: SYCC2_ARATH

General Information:
Name(s) found: SYCC2_ARATH [Swiss-Prot]
Description(s) found:
Found 9 descriptions.
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  • Cysteine--tRNA ligase 2, cytoplasmic OS=Arabidopsis thaliana GN=At5g38830 PE=2 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 511 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IEA]
    Biological Process: response to cadmium ion [IEP]
    cysteinyl-tRNA aminoacylation [ISS]
    Molecular Function: nucleotide binding [IEA]
    ATP binding [IEA][ISS]
    cysteine-tRNA ligase activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAEKMELKL YNTMTQQKEV LIPITPGKIG LYVCGITAYD FSHIGHARAA VSFDVLYRYL  60
   61 KHLDYDVTFV RNFTDVDDKI IDRANKNGED PLDLSNRFCD EYLVDMGALQ CLPPTHQPRV 120
  121 SEHMDNIIKM IEKIIEKDCG YVVEGDVFFS VDKSPNYGKL SGQLLEHTRA GERVAVDSRK 180
  181 RNPADFALWK AAKPDEPSWE SPWGPGRPGW HIECSAMSVH YLSPKFDIHG GGADLKFPHH 240
  241 ENEIAQTCAA CEDSGVNYWL HNGHVTINNE KMAKSKHNFK TIREITASYH PLALRHFLMS 300
  301 AQYRSPLSFT ASQLESSSEA LYYVYQTLQD LDEGLSPYQD ALSEDGGKSE QTAEGKDIIK 360
  361 KLKTEFESKM LDDLNTAHIL TGAYQDALKF INASLSKLKK MQKKQRMSML VSLVEIEKAA 420
  421 REVLDVLGLL TTLSYAEILK EMKLKTLIRA EIGEEGISQL IEERITARKN KDFAKSDEIR 480
  481 EKLTRKGIAL MDIGKETVWR PCFPSQADSS T

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..511] PSI-BLAST 109.0 Cysteinyl-tRNA synthetase (CysRS)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ligase activity, forming carbon-oxygen bonds
    		•  7.16276509815667 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  7.16276509815667 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
    		•  7.13957775963187 bayes_pls_golite062009
  • ligase activity
    		•  6.11211476973434 bayes_pls_golite062009
  • cysteine-tRNA ligase activity
    		•  5.23703961447809 bayes_pls_golite062009
  • isoleucine-tRNA ligase activity
    		•  3.76808520367507 bayes_pls_golite062009
  • glutamate-tRNA ligase activity
    		•  2.63681738794687 bayes_pls_golite062009
  • catalytic activity
    		•  2.37674226834122 bayes_pls_golite062009
  • methionine-tRNA ligase activity
    		•  2.01261843164558 bayes_pls_golite062009
  • tyrosine-tRNA ligase activity
    		•  1.88984817882585 bayes_pls_golite062009
  • tryptophan-tRNA ligase activity
    		•  1.14187887833901 bayes_pls_golite062009
  • arginine-tRNA ligase activity
    		•  1.13743634264647 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  0.2293846471193 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.161799496958314 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.126511747475258 bayes_pls_golite062009
  • glutamine-tRNA ligase activity
    		•  0.118292082006187 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle