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Protein Overview: CDC24_ARATH

General Information:
Name(s) found: CDC24_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|67633828|gb|AAY78838.1| WD-40 repeat family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15240403|ref|NP_198042.1| WD-40 repeat family protein [Arabidopsis thaliana] [NCBI NR]
  • Cell division cycle 20.4, cofactor of APC complex OS=Arabidopsis thaliana GN=CDC20-4 PE=2 SV=1 [Swiss-Prot]
  • WD-40 repeat family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 WD-40 repeat family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | WD-40 repeat family protein | chr5:9463755-9465089 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • signal transducer [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Transducin family protein / WD-40 repeat family protein | chr5:9463752-9465086 FORWARD LENGTH=444 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Cell division cycle 20, cofactor of APC complex OS=Arabidopsis thaliana GN=At5g26900 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 444 amino acids

    Gene Ontology:
    Cellular Component: heterotrimeric G-protein complex [ISS]
    Biological Process: signal transduction [ISS]
    Molecular Function: signal transducer activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSGMRATCT VPEHFLPRKL SKQNLDRFIP NRSAKDFDFA NYALTQGSKR NLDEVTSASR  60
   61 KAYMTQLAVV MNQNRTRILA FRNKPKSLLS TNHSDSPHQN PKPVKPRRYI PQNSERVLDA 120
  121 PGLRDDFSLN LLDWGSANVL AIALGDTVYL WDASSGSTSE LVTIDEDKGP VTSINWTQDG 180
  181 LDLAVGLDNS EVQLWDCVSN RQVRTLRGGH ESRVGSLAWD NHILTTGGMD GKIVNNDVRI 240
  241 RSSIVETYLG HTEEVCGLKW SESGNKQASG GNDNVVHIWD RSLASSKQTR QWLHRFEEHT 300
  301 AAVRALAWCP FQASLLATGG GVGDGKIKFW NTHTGACLNS VETGSQVCSL LWSQSERELL 360
  361 SSHGFTQNQL TLWKYPSMSK MAELNGHTSR VLFMAQSPNG CTVASAAGDE NLRLWNVFGE 420
  421 PPKTTKKAAS KKYPELFSHV NSLR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..102] PSI-BLAST 37.0 No description for 2hesX was found.
    2 View Details [103..444] PSI-BLAST 76.0 PAF-AH Holoenzyme: Lis1/Alfa2

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • histone methyltransferase activity (H3-K4 specific)
    		•  4.71992275913384 bayes_pls_golite062009
  • S-adenosylmethionine-dependent methyltransferase activity
    		•  3.25521258308263 bayes_pls_golite062009
  • binding
    		•  2.42570478946173 bayes_pls_golite062009
  • protein binding
    		•  2.26925404328312 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  2.20122168933317 bayes_pls_golite062009
  • transcription repressor activity
    		•  2.10542371217826 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.10348788067437 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.00420268007946 bayes_pls_golite062009
  • histone methyltransferase activity
    		•  1.85632145559025 bayes_pls_golite062009
  • dynein binding
    		•  1.70203790763669 bayes_pls_golite062009
  • ubiquitin-protein ligase activity
    		•  1.59258100795958 bayes_pls_golite062009
  • DNA binding
    		•  1.53482914288832 bayes_pls_golite062009
  • actin binding
    		•  1.40054662654509 bayes_pls_golite062009
  • protein methyltransferase activity
    		•  1.35170368882651 bayes_pls_golite062009
  • transcription corepressor activity
    		•  1.29070899918311 bayes_pls_golite062009
  • histone-lysine N-methyltransferase activity
    		•  1.15313682561559 bayes_pls_golite062009
  • protein-lysine N-methyltransferase activity
    		•  1.15313682561559 bayes_pls_golite062009
  • lysine N-methyltransferase activity
    		•  1.15313682561559 bayes_pls_golite062009
  • tubulin binding
    		•  1.10875870970504 bayes_pls_golite062009
  • microtubule binding
    		•  1.03769395387791 bayes_pls_golite062009
  • transcription factor activity
    		•  0.897833210520351 bayes_pls_golite062009
  • transcription activator activity
    		•  0.724420384084538 bayes_pls_golite062009
  • transporter activity
    		•  0.692270256454453 bayes_pls_golite062009
  • histone binding
    		•  0.685319917508843 bayes_pls_golite062009
  • DNA-dependent ATPase activity
    		•  0.625780732991652 bayes_pls_golite062009
  • acid-amino acid ligase activity
    		•  0.535041400676017 bayes_pls_golite062009
  • transcription factor binding
    		•  0.469377587704245 bayes_pls_golite062009
  • DNA polymerase activity
    		•  0.428715007921149 bayes_pls_golite062009
    		• 0.309947462700731 bayes_pls_golite062009
  • structural molecule activity
    		•  0.254012051644049 bayes_pls_golite062009
  • transcription cofactor activity
    		•  0.245000508226811 bayes_pls_golite062009
  • protein kinase activity
    		•  0.229242350006544 bayes_pls_golite062009
  • DNA helicase activity
    		•  0.220747580531792 bayes_pls_golite062009
  • hydrolase activity
    		•  0.181211933860468 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.121183207943714 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.00585398682921312 bayes_pls_golite062009
  • N-methyltransferase activity
    		•  0.00335766408304172 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle