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Protein Overview: gi|30685276, gi|...

General Information:
Name(s) found: gi|30685276 [NCBI NR]
gi|30685269 [NCBI NR]
gi|110738501 [NCBI NR]
gi|110737265 [NCBI NR]
Description(s) found:
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  • gi|30685276|ref|NP_197031.3| KH domain-containing protein [Arabidopsis thaliana] [NCBI NR]
  • gi|30685269|ref|NP_851040.1| KH domain-containing protein [Arabidopsis thaliana] [NCBI NR]
  • gi|110738501|dbj|BAF01176.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • gi|110737265|dbj|BAF00580.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • KH domain-containing protein [Arabidopsis thaliana]gi|30685269|ref|NP_851040.1| KH domain-containing protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 KH domain-containing protein, various predicted proteins, Arabidopsis thaliana and Oryza sativa [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | KH domain-containing protein | chr5:4958741-4960950 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • hypothetical protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • nucleic acid binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | RNA-binding KH domain-containing protein | chr5:4958738-4960947 FORWARD LENGTH=548 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Putative uncharacterized protein At5g15270 OS=Arabidopsis thaliana GN=At5g15270 PE=2 SV=1 [ARATH-contam.fasta]
  • Putative uncharacterized protein At5g15270 OS=Arabidopsis thaliana GN=At5g15270 PE=1 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 548 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: biological_process [ND]
    Molecular Function: nucleic acid binding [ISS]
    RNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPDHRMSPD HRDSHRKRSR PQSDYDDNGG SKRRYRGDDR DSLVIDRDDT VFRYLCPVKK  60
   61 IGSVIGRGGD IVKQLRNDTR SKIRIGEAIP GCDERVITIY SPSDETNAFG DGEKVLSPAQ 120
  121 DALFRIHDRV VADDARSEDS PEGEKQVTAK LLVPSDQIGC ILGRGGQIVQ NIRSETGAQI 180
  181 RIVKDRNMPL CALNSDELIQ ISGEVLIVKK ALLQIASRLH ENPSRSQNLL SSSGGYPAGS 240
  241 LMSHAGGPRL VGLAPLMGSY GRDAGDWSRP LYQPPRNDPP ATEFFIRLVS PVENIASVIG 300
  301 KGGALINQLR QETRATIKVD SSRTEGNDCL ITISAREVFE DAYSPTIEAV MRLQPKCSDK 360
  361 VERDSGLVSF TTRLLVPSSR IGCILGKGGA IITEMRRMTK ANIRILGKEN LPKVASDDDE 420
  421 MVQISGELDV AKEALIQITS RLRANVFDRE GAVSALMPVL PYVPVAPDAG DRFDYDSRDS 480
  481 RRLERGNPYP GGYGSSGVSA EGYSPYGAPV GGSSSTPYGV YGGYASGRSS SSGLSSHSST 540
  541 YRRRNYDY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..246] PSI-BLAST 43.69897 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5
    2 View Details [247..447] PSI-BLAST 20.0 Far upstream binding element, FBP, KH3 and KH4 domains
    3 View Details [448..548] MSA 3.123996 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription regulator activity
    		•  4.09002897694881 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.55336640491561 bayes_pls_golite062009
  • RNA binding
    		•  2.47373172667773 bayes_pls_golite062009
  • binding
    		•  1.9759530321894 bayes_pls_golite062009
  • DNA binding
    		•  1.83809666640016 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  1.05717140831527 bayes_pls_golite062009
  • transcription termination factor activity
    		•  1.01993495617192 bayes_pls_golite062009
  • structural molecule activity
    		•  0.734332455050128 bayes_pls_golite062009
  • protein binding
    		•  0.523813050066193 bayes_pls_golite062009
  • mRNA binding
    		•  0.403794675006504 bayes_pls_golite062009
  • catalytic activity
    		•  0.10089766806364 bayes_pls_golite062009
  • transcription factor binding
    		•  0.0560158842173433 bayes_pls_golite062009
    2
    Term Confidence Notes
  • RNA binding
    		•  5.18414740305744 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.78650555542715 bayes_pls_golite062009
  • mRNA binding
    		•  3.82977088614136 bayes_pls_golite062009
  • binding
    		•  3.45962790790935 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.28364833275102 bayes_pls_golite062009
  • DNA binding
    		•  2.03207983673692 bayes_pls_golite062009
  • transcription factor activity
    		•  1.30278154718684 bayes_pls_golite062009
  • protein binding
    		•  1.16541072642796 bayes_pls_golite062009
    		• 1.02980840568405 bayes_pls_golite062009
  • poly-pyrimidine tract binding
    		•  0.63404501189528 bayes_pls_golite062009
  • mRNA 3'-UTR binding
    		•  0.489176583045793 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.392035003865213 bayes_pls_golite062009
  • transcription activator activity
    		•  0.324382863054631 bayes_pls_golite062009
  • transcription factor binding
    		•  0.254024117548226 bayes_pls_golite062009
  • catalytic activity
    		•  0.113112541746059 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.0321875054165348 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle