| Protein: | gi|30685276, gi|... |
| Organism: | Arabidopsis thaliana |
| Length: | 548 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30685276, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
330.0 | [0..1] | [533..1] |
|
Region A: Residues: [1-246] |
1 11 21 31 41 51
| | | | | |
1 MSPDHRMSPD HRDSHRKRSR PQSDYDDNGG SKRRYRGDDR DSLVIDRDDT VFRYLCPVKK 60
61 IGSVIGRGGD IVKQLRNDTR SKIRIGEAIP GCDERVITIY SPSDETNAFG DGEKVLSPAQ 120
121 DALFRIHDRV VADDARSEDS PEGEKQVTAK LLVPSDQIGC ILGRGGQIVQ NIRSETGAQI 180
181 RIVKDRNMPL CALNSDELIQ ISGEVLIVKK ALLQIASRLH ENPSRSQNLL SSSGGYPAGS 240
241 LMSHAG
|
| Detection Method: |  |
| Confidence: | 43.69897 |
| Match: | 1e3hA |
| Description: | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.09002897694881 | bayes_pls_golite062009 |
| nucleic acid binding | 2.55336640491561 | bayes_pls_golite062009 |
| RNA binding | 2.47373172667773 | bayes_pls_golite062009 |
| binding | 1.9759530321894 | bayes_pls_golite062009 |
| DNA binding | 1.83809666640016 | bayes_pls_golite062009 |
| structural constituent of ribosome | 1.05717140831527 | bayes_pls_golite062009 |
| transcription termination factor activity | 1.01993495617192 | bayes_pls_golite062009 |
| structural molecule activity | 0.734332455050128 | bayes_pls_golite062009 |
| protein binding | 0.523813050066193 | bayes_pls_golite062009 |
| mRNA binding | 0.403794675006504 | bayes_pls_golite062009 |
| catalytic activity | 0.10089766806364 | bayes_pls_golite062009 |
| transcription factor binding | 0.0560158842173433 | bayes_pls_golite062009 |
|
Region A: Residues: [247-447] |
1 11 21 31 41 51
| | | | | |
1 GPRLVGLAPL MGSYGRDAGD WSRPLYQPPR NDPPATEFFI RLVSPVENIA SVIGKGGALI 60
61 NQLRQETRAT IKVDSSRTEG NDCLITISAR EVFEDAYSPT IEAVMRLQPK CSDKVERDSG 120
121 LVSFTTRLLV PSSRIGCILG KGGAIITEMR RMTKANIRIL GKENLPKVAS DDDEMVQISG 180
181 ELDVAKEALI QITSRLRANV F
|
| Detection Method: | |
| Confidence: | 20.0 |
| Match: | 1j4wA |
| Description: | Far upstream binding element, FBP, KH3 and KH4 domains |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 5.18414740305744 | bayes_pls_golite062009 |
| nucleic acid binding | 4.78650555542715 | bayes_pls_golite062009 |
| mRNA binding | 3.82977088614136 | bayes_pls_golite062009 |
| binding | 3.45962790790935 | bayes_pls_golite062009 |
| transcription regulator activity | 2.28364833275102 | bayes_pls_golite062009 |
| DNA binding | 2.03207983673692 | bayes_pls_golite062009 |
| transcription factor activity | 1.30278154718684 | bayes_pls_golite062009 |
| protein binding | 1.16541072642796 | bayes_pls_golite062009 |
| 1.02980840568405 | bayes_pls_golite062009 | |
| poly-pyrimidine tract binding | 0.63404501189528 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.489176583045793 | bayes_pls_golite062009 |
| transcription repressor activity | 0.392035003865213 | bayes_pls_golite062009 |
| transcription activator activity | 0.324382863054631 | bayes_pls_golite062009 |
| transcription factor binding | 0.254024117548226 | bayes_pls_golite062009 |
| catalytic activity | 0.113112541746059 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.0321875054165348 | bayes_pls_golite062009 |
|
Region A: Residues: [448-548] |
1 11 21 31 41 51
| | | | | |
1 DREGAVSALM PVLPYVPVAP DAGDRFDYDS RDSRRLERGN PYPGGYGSSG VSAEGYSPYG 60
61 APVGGSSSTP YGVYGGYASG RSSSSGLSSH SSTYRRRNYD Y
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
