Protein Overview: gi|30685276, gi|...

General Information:
Name(s) found:	gi\|30685276 [NCBI NR] gi\|30685269 [NCBI NR] gi\|110738501 [NCBI NR] gi\|110737265 [NCBI NR]
Description(s) found: Found 12 descriptions. SHOW ALL	gi\|30685276\|ref\|NP_197031.3\| KH domain-containing protein [Arabidopsis thaliana] [NCBI NR] gi\|30685269\|ref\|NP_851040.1\| KH domain-containing protein [Arabidopsis thaliana] [NCBI NR] gi\|110738501\|dbj\|BAF01176.1\| hypothetical protein [Arabidopsis thaliana] [NCBI NR] gi\|110737265\|dbj\|BAF00580.1\| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
Organism:	Arabidopsis thaliana
Length:	548 amino acids
Gene Ontology:
Cellular Component:	cellular_component [ND]
Biological Process:	biological_process [ND]
Molecular Function:	nucleic acid binding [ISS] RNA binding [IEA]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPDHRMSPD HRDSHRKRSR PQSDYDDNGG SKRRYRGDDR DSLVIDRDDT VFRYLCPVKK  60
   61 IGSVIGRGGD IVKQLRNDTR SKIRIGEAIP GCDERVITIY SPSDETNAFG DGEKVLSPAQ 120
  121 DALFRIHDRV VADDARSEDS PEGEKQVTAK LLVPSDQIGC ILGRGGQIVQ NIRSETGAQI 180
  181 RIVKDRNMPL CALNSDELIQ ISGEVLIVKK ALLQIASRLH ENPSRSQNLL SSSGGYPAGS 240
  241 LMSHAGGPRL VGLAPLMGSY GRDAGDWSRP LYQPPRNDPP ATEFFIRLVS PVENIASVIG 300
  301 KGGALINQLR QETRATIKVD SSRTEGNDCL ITISAREVFE DAYSPTIEAV MRLQPKCSDK 360
  361 VERDSGLVSF TTRLLVPSSR IGCILGKGGA IITEMRRMTK ANIRILGKEN LPKVASDDDE 420
  421 MVQISGELDV AKEALIQITS RLRANVFDRE GAVSALMPVL PYVPVAPDAG DRFDYDSRDS 480
  481 RRLERGNPYP GGYGSSGVSA EGYSPYGAPV GGSSSTPYGV YGGYASGRSS SSGLSSHSST 540
  541 YRRRNYDY

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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No microscopy data found in the PDR for this protein.

Protein Structure Data

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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..246]	PSI-BLAST	43.69897	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5
2	View Details	[247..447]	PSI-BLAST	20.0	Far upstream binding element, FBP, KH3 and KH4 domains
3	View Details	[448..548]	MSA	3.123996	View MSA. No confident structure predictions are available.

Functions predicted (by domain):

#

Gene Ontology predictions

1

Term	Confidence	Notes
transcription regulator activity	4.09002897694881	bayes_pls_golite062009
nucleic acid binding	2.55336640491561	bayes_pls_golite062009
RNA binding	2.47373172667773	bayes_pls_golite062009
binding	1.9759530321894	bayes_pls_golite062009
DNA binding	1.83809666640016	bayes_pls_golite062009
structural constituent of ribosome	1.05717140831527	bayes_pls_golite062009
transcription termination factor activity	1.01993495617192	bayes_pls_golite062009
structural molecule activity	0.734332455050128	bayes_pls_golite062009
protein binding	0.523813050066193	bayes_pls_golite062009
mRNA binding	0.403794675006504	bayes_pls_golite062009
catalytic activity	0.10089766806364	bayes_pls_golite062009
transcription factor binding	0.0560158842173433	bayes_pls_golite062009

2

Term	Confidence	Notes
RNA binding	5.18414740305744	bayes_pls_golite062009
nucleic acid binding	4.78650555542715	bayes_pls_golite062009
mRNA binding	3.82977088614136	bayes_pls_golite062009
binding	3.45962790790935	bayes_pls_golite062009
transcription regulator activity	2.28364833275102	bayes_pls_golite062009
DNA binding	2.03207983673692	bayes_pls_golite062009
transcription factor activity	1.30278154718684	bayes_pls_golite062009
protein binding	1.16541072642796	bayes_pls_golite062009
	1.02980840568405	bayes_pls_golite062009
poly-pyrimidine tract binding	0.63404501189528	bayes_pls_golite062009
mRNA 3'-UTR binding	0.489176583045793	bayes_pls_golite062009
transcription repressor activity	0.392035003865213	bayes_pls_golite062009
transcription activator activity	0.324382863054631	bayes_pls_golite062009
transcription factor binding	0.254024117548226	bayes_pls_golite062009
catalytic activity	0.113112541746059	bayes_pls_golite062009
sequence-specific DNA binding	0.0321875054165348	bayes_pls_golite062009

3

No functions predicted.

Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

Philius Transmembrane Prediction:

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.97

Source: Reynolds et al. (2008)

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle