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Protein Overview: gi|42572961

General Information:
Name(s) found: gi|42572961 [NCBI NR]
Description(s) found:
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  • gi|42572961|ref|NP_974577.1| Toll-Interleukin-Resistance (TIR) domain-containing protein [Arabidopsis thaliana] [NCBI NR]
  • Toll-Interleukin-Resistance (TIR) domain-containing protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Toll-Interleukin-Resistance (TIR) domain-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | Toll-Interleukin-Resistance (TIR) domain-containing protein | chr4:10795879-10796697 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • transmembrane receptor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Toll-Interleukin-Resistance (TIR) domain family protein | chr4:10795869-10796687 REVERSE LENGTH=241 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Toll-Interleukin-Resistance domain-containing protein OS=Arabidopsis thaliana GN=At4g19910 PE=4 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 241 amino acids

    Gene Ontology:
    Cellular Component: membrane [ISS]
    Biological Process: signal transduction [IEA]
    innate immune response [IEA]
    defense response [ISS]
    Molecular Function: transmembrane receptor activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIQARPLVF INHGESDQSD GFIRHVERAL NDEGFNVFID SDERRGRGME HIFRAIDNSN  60
   61 VALVIFSDRY TASELCLHEA VRIYDRRREG KLVLIPVFYR VSEDDVNMFN GRFGESFLET 120
  121 LTIQGFRDHP FAEHWMRNVN FICTDTGFTS ADYSSNDTSL VEEIVRAIKR RLQGKKLPRR 180
  181 VQDEKLPSPL DMFMPKQPNA QEGFGKELLY VAIAALLCYF IIPFVFTDWM SSVSFSGSLL 240
  241 F

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..152] PSI-BLAST 10.221849 Toll-like receptor 2, TLR2
    2 View Details [153..241] MSA 36.349997 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.261666574457319 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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