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Protein Overview: DSE1_ARATH

General Information:
Name(s) found: DSE1_ARATH [Swiss-Prot]
Description(s) found:
Found 10 descriptions.
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  • Protein DECREASED SIZE EXCLUSION LIMIT 1 OS=Arabidopsis thaliana GN=DSE1 PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 386 amino acids

    Gene Ontology:
    Cellular Component: CUL4 RING ubiquitin ligase complex [ISS]
    Biological Process: embryonic development [IMP]
    embryonic development ending in seed dormancy [NAS]
    acquisition of desiccation tolerance [IMP]
    Molecular Function: nucleotide binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKRPPPDPV AVLRGHRHSV MDVSFHPSKS LLFTGSADGE LRIWDTIQHR AVSSAWAHSR  60
   61 ANGVLAVAAS PWLGEDKIIS QGRDGTVKCW DIEDGGLSRD PLLILETCAY HFCKFSLVKK 120
  121 PKNSLQEAES HSRGCDEQDG GDTCNVQIAD DSERSEEDSG LLQDKDHAEG TTFVAVVGEQ 180
  181 PTEVEIWDLN TGDKIIQLPQ SSPDESPNAS TKGRGMCMAV QLFCPPESQG FLHVLAGYED 240
  241 GSILLWDIRN AKIPLTSVKF HSEPVLSLSV ASSCDGGISG GADDKIVMYN LNHSTGSCTI 300
  301 RKEITLERPG VSGTSIRVDG KIAATAGWDH RIRVYNYRKG NALAILKYHR ATCNAVSYSP 360
  361 DCELMASASE DATVALWKLY PPHKSL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..386] PSI-BLAST 74.0 PAF-AH Holoenzyme: Lis1/Alfa2

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  2.42570478946173 bayes_pls_golite062009
  • protein binding
    		•  1.21879977456466 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  1.19593750149343 bayes_pls_golite062009
  • receptor activity
    		•  1.12819778129653 bayes_pls_golite062009
  • signal transducer activity
    		•  0.974380908248463 bayes_pls_golite062009
  • molecular transducer activity
    		•  0.974380908248463 bayes_pls_golite062009
  • histone binding
    		•  0.685319917508843 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.579815310385678 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.570141050045461 bayes_pls_golite062009
  • actin binding
    		•  0.529861581509437 bayes_pls_golite062009
  • DNA-dependent ATPase activity
    		•  0.485054404024611 bayes_pls_golite062009
  • receptor binding
    		•  0.316169754698691 bayes_pls_golite062009
  • chromatin binding
    		•  0.145491963066342 bayes_pls_golite062009
  • DNA binding
    		•  0.0736878329528894 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle