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Protein Overview: gi|42572647

General Information:
Name(s) found: gi|42572647 [NCBI NR]
Description(s) found:
Found 8 descriptions.
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  • gi|42572647|ref|NP_974419.1| nicastrin-related [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 705 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: protein processing [IEA]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMGLIRLLS IAFTLVLLSI LPLHLSLADE ITSIESVPDL QKLMYVAVDG FPCVRLLNLS  60
   61 GEIGCSNPGI NKVVAPIIKL KDVKDLVQPH TILVTADEME DFFTRVSTDL SFASKIGGVL 120
  121 VESGSNFQQK LKGFSPDKRF PQAQFSPYEN VEYKWNSAAS SIMWRNYNFP VYLLSESGIS 180
  181 AVHEILSKKK MKHGTYTSDV AEFNMVMETT KAGTHNSEAC LQEGTCLPLG GYSVWSSLPP 240
  241 ISVSSSNNRK PVVLTVASMD TASFFRDKSF GADSPISGLV ALLGAVDALS RVDGISNLKK 300
  301 QLVFLVLTGE TWGYLGSRRF LHELDLHSDA VAGLSNTSIE TVLEIGSVGK GLSGGINTFF 360
  361 AHKTRVSSVT NMTLDALKIA QDSLASKNIK ILSADTANPG IPPSSLMAFM RKNPQTSAVV 420
  421 LEDFDTNFVN KFYHSHLDDL CKKSHSLSFS SFRSKPHFAL LIPFWCCIAA NINSSSVVAA 480
  481 ASVVARTLYI LASDNKDTSN SALGSIHVNA SFVEELLTCL LACEPGLSCN LVKDYISPTN 540
  541 TCPGNYAGVI LGEPSSKPYL GYVGDVSRFL WNFLADKTSV QKGNTTSVCS KGVCSKTDEV 600
  601 CIKAESNKEG TCVVSTTRYV PAYSTRLKYN DGAWTILPQN SSDSMGMVDP VWTESNWDTL 660
  661 RVHVYTVQHS AYDNAVLVAG ITVTTLAYIG ILAAKSIITK ALKQD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..66] MSA 1.136996 View MSA. No confident structure predictions are available.
    2 View Details [67..580] PSI-BLAST 62.39794 Transferrin receptor ectodomain, C-terminal domain; Transferrin receptor ectodomain, apical domain; Transferrin receptor ectodomain, protease-like domain
    3 View Details [581..705] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • transmembrane receptor activity
    		•  3.68442839136734 bayes_pls_golite062009
  • peptidase activity
    		•  3.64510404037841 bayes_pls_golite062009
  • receptor activity
    		•  3.43249110530054 bayes_pls_golite062009
  • peptidase activity, acting on L-amino acid peptides
    		•  3.26499474130077 bayes_pls_golite062009
  • hydrolase activity
    		•  2.98013991489506 bayes_pls_golite062009
  • signal transducer activity
    		•  2.61784313760368 bayes_pls_golite062009
  • molecular transducer activity
    		•  2.61784313760368 bayes_pls_golite062009
  • metallopeptidase activity
    		•  2.04062448553328 bayes_pls_golite062009
  • exopeptidase activity
    		•  1.70361627875478 bayes_pls_golite062009
  • catalytic activity
    		•  1.3989281287879 bayes_pls_golite062009
  • metalloexopeptidase activity
    		•  0.950629204175701 bayes_pls_golite062009
  • carboxypeptidase activity
    		•  0.891655769761122 bayes_pls_golite062009
  • binding
    		•  0.688905385320691 bayes_pls_golite062009
  • metallocarboxypeptidase activity
    		•  0.180859448845431 bayes_pls_golite062009
  • protein binding
    		•  0.00854198798870509 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle