| Protein: | gi|42572647 |
| Organism: | Arabidopsis thaliana |
| Length: | 705 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42572647.
| Description | E-value | Query Range |
Subject Range |
|
|
568.0 | [0..2] | [705..14] |
|
Region A: Residues: [1-66] |
1 11 21 31 41 51
| | | | | |
1 MAMGLIRLLS IAFTLVLLSI LPLHLSLADE ITSIESVPDL QKLMYVAVDG FPCVRLLNLS 60
61 GEIGCS
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [67-580] |
1 11 21 31 41 51
| | | | | |
1 NPGINKVVAP IIKLKDVKDL VQPHTILVTA DEMEDFFTRV STDLSFASKI GGVLVESGSN 60
61 FQQKLKGFSP DKRFPQAQFS PYENVEYKWN SAASSIMWRN YNFPVYLLSE SGISAVHEIL 120
121 SKKKMKHGTY TSDVAEFNMV METTKAGTHN SEACLQEGTC LPLGGYSVWS SLPPISVSSS 180
181 NNRKPVVLTV ASMDTASFFR DKSFGADSPI SGLVALLGAV DALSRVDGIS NLKKQLVFLV 240
241 LTGETWGYLG SRRFLHELDL HSDAVAGLSN TSIETVLEIG SVGKGLSGGI NTFFAHKTRV 300
301 SSVTNMTLDA LKIAQDSLAS KNIKILSADT ANPGIPPSSL MAFMRKNPQT SAVVLEDFDT 360
361 NFVNKFYHSH LDDLCKKSHS LSFSSFRSKP HFALLIPFWC CIAANINSSS VVAAASVVAR 420
421 TLYILASDNK DTSNSALGSI HVNASFVEEL LTCLLACEPG LSCNLVKDYI SPTNTCPGNY 480
481 AGVILGEPSS KPYLGYVGDV SRFLWNFLAD KTSV
|
| Detection Method: | |
| Confidence: | 62.39794 |
| Match: | 1de4C |
| Description: | Transferrin receptor ectodomain, C-terminal domain; Transferrin receptor ectodomain, apical domain; Transferrin receptor ectodomain, protease-like domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transmembrane receptor activity | 3.68442839136734 | bayes_pls_golite062009 |
| peptidase activity | 3.64510404037841 | bayes_pls_golite062009 |
| receptor activity | 3.43249110530054 | bayes_pls_golite062009 |
| peptidase activity, acting on L-amino acid peptides | 3.26499474130077 | bayes_pls_golite062009 |
| hydrolase activity | 2.98013991489506 | bayes_pls_golite062009 |
| signal transducer activity | 2.61784313760368 | bayes_pls_golite062009 |
| molecular transducer activity | 2.61784313760368 | bayes_pls_golite062009 |
| metallopeptidase activity | 2.04062448553328 | bayes_pls_golite062009 |
| exopeptidase activity | 1.70361627875478 | bayes_pls_golite062009 |
| catalytic activity | 1.3989281287879 | bayes_pls_golite062009 |
| metalloexopeptidase activity | 0.950629204175701 | bayes_pls_golite062009 |
| carboxypeptidase activity | 0.891655769761122 | bayes_pls_golite062009 |
| binding | 0.688905385320691 | bayes_pls_golite062009 |
| metallocarboxypeptidase activity | 0.180859448845431 | bayes_pls_golite062009 |
| protein binding | 0.00854198798870509 | bayes_pls_golite062009 |
|
Region A: Residues: [581-705] |
1 11 21 31 41 51
| | | | | |
1 QKGNTTSVCS KGVCSKTDEV CIKAESNKEG TCVVSTTRYV PAYSTRLKYN DGAWTILPQN 60
61 SSDSMGMVDP VWTESNWDTL RVHVYTVQHS AYDNAVLVAG ITVTTLAYIG ILAAKSIITK 120
121 ALKQD
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
