| Protein: | Taf1-PB |
| Organism: | Drosophila melanogaster |
| Length: | 2129 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Taf1-PB.
| Description | E-value | Query Range |
Subject Range |
|
|
1979.0 | [0..1] | [2129..1] |
|
Region A: Residues: [1-135] |
1 11 21 31 41 51
| | | | | |
1 MEMESDNSDD EGSIGNGLDL TGILFGNIDS EGRLLQDDDG EGRGGTGFDA ELRENIGSLS 60
61 KLGLDSMLLE VIDLKEAEPP SDDEEEEDAR PSAVSASEGM SAFDALKAGV KREDGAVKAQ 120
121 DDAIDYSDIT ELSED
|
| Detection Method: |  |
| Confidence: | 22.09691 |
| Match: | 1tbaA |
| Description: | TAF(II)230 TBP-binding fragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [136-188] |
1 11 21 31 41 51
| | | | | |
1 CPRTPPEETS TYDDLEDAIP ASKVEAKLTK DDKELMPPPS APMRSGSGGG IEE
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [189-389] |
1 11 21 31 41 51
| | | | | |
1 PAKSNDASSP SDDSKSTDSK DADRKLDTPL ADILPSKYQN VDVRELFPDF RPQKVLRFSR 60
61 LFGPGKPTSL PQIWRHVRKR RRKRNQSRDQ KTTNTGGSDS PSDTEEPRKR GFSLHYAAEP 120
121 TPAECMSDDE DKLLGDFNSE DVRPEGPDNG ENSDQKPKVA DWRFGPAQIW YDMLEVPDSG 180
181 EGFNYGFKTK AASTSSQPQL K
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [390-470] |
1 11 21 31 41 51
| | | | | |
1 DERRVKSPED DVEDPSIADD AFLMVSQLHW EDDVVWDGND IKAKVLQKLN SKTNAAGWLP 60
61 SSGSRTAGAF SQPGKPSMPV G
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [471-534] |
1 11 21 31 41 51
| | | | | |
1 SGSSKQGSGA SSKKAQQNAQ AKPAEAPDDT WYSLFPVENE ELIYYKWEDE VIWDAQQVSK 60
61 VPKP
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [535-622] |
1 11 21 31 41 51
| | | | | |
1 KVLTLDPNDE NIILGIPDDI DPSKINKSTG PPPKIKIPHP HVKKSKILLG KAGVINVLAE 60
61 DTPPPPPKSP DRDPFNISND TYYTPKTE
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [623-880] |
1 11 21 31 41 51
| | | | | |
1 PTLRLKVGGN LIQHSTPVVE LRAPFVPTHM GPMKLRAFHR PPLKKYSHGP MAQSIPHPVF 60
61 PLLKTIAKKA KQREVERIAS GGGDVFFMRN PEDLSGRDGD IVLAEFCEEH PPLINQVGMC 120
121 SKIKNYYKRK AEKDSGPQDF VYGEVAFAHT SPFLGILHPG QCIQAIENNM YRAPIYPHKM 180
181 AHNDFLVIRT RNNYWIRSVN SIYTVGQECP LYEVPGPNSK RANNFTRDFL QVFIYRLFWK 240
241 SRDNPRRIRM DDIKQAFP
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [881-1336] |
1 11 21 31 41 51
| | | | | |
1 AHSESSIRKR LKQCADFKRT GMDSNWWVIK PEFRLPSEEE IRAMVSPEQC CAYFSMIAAE 60
61 QRLKDAGYGE KFLFAPQEDD DEEAQLKLDD EVKVAPWNTT RAYIQAMRGK CLLQLSGPAD 120
121 PTGCGEGFSY VRVPNKPTQT KEEQESQPKR SVTGTDADLR RLPLQRAKEL LRQFKVPEEE 180
181 IKKLSRWEVI DVVRTLSTEK AKAGEEGMDK FSRGNRFSIA EHQERYKEEC QRIFDLQNRV 240
241 LASSEVLSTD EAESSASEES DLEELGKNLE NMLSNKKTST QLSREREELE RQELLRQLDE 300
301 EHGGPSGSGG AKGAKGKDDP GQQMLATNNQ GRILRITRTF RGNDGKEYTR VETVRRQPVI 360
361 DAYIKIRTTK DEQFIKQFAT LDEQQKEEMK REKRRIQEQL RRIKRNQERE RLAQLAQNQK 420
421 LQPGGMPTSL GDPKSSGGHS HKERDSGYKE VSPSRK
|
| Detection Method: | |
| Confidence: | 4.522879 |
| Match: | 1hciA |
| Description: | alpha-actinin |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| cytoskeletal protein binding | 3.1249176514747 | bayes_pls_golite062009 |
| protein binding | 3.02658853804606 | bayes_pls_golite062009 |
| binding | 3.02588173330447 | bayes_pls_golite062009 |
| actin binding | 2.99249761866244 | bayes_pls_golite062009 |
| actin filament binding | 2.67692481578399 | bayes_pls_golite062009 |
| transcription regulator activity | 2.44577095508006 | bayes_pls_golite062009 |
| transcription activator activity | 2.01637187744715 | bayes_pls_golite062009 |
| protein complex binding | 1.83007463428411 | bayes_pls_golite062009 |
| transcription coactivator activity | 1.17938200837598 | bayes_pls_golite062009 |
| protein dimerization activity | 0.909550969508159 | bayes_pls_golite062009 |
| identical protein binding | 0.650360032617391 | bayes_pls_golite062009 |
| structural molecule activity | 0.565745818602161 | bayes_pls_golite062009 |
| transcription factor binding | 0.563443610763849 | bayes_pls_golite062009 |
| receptor binding | 0.344679796081435 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.32199002401243 | bayes_pls_golite062009 |
|
Region A: Residues: [1337-1400] |
1 11 21 31 41 51
| | | | | |
1 KFKLKPDLKL KCGACGQVGH MRTNKACPLY SGMQSSLSQS NPSLADDFDE QSEKEMTMDD 60
61 DDLV
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1401-1724] |
1 11 21 31 41 51
| | | | | |
1 NVDGTKVTLS SKILKRHGGD DGKRRSGSSS GFTLKVPRDA MGKKKRRVGG DLHCDYLQRH 60
61 NKTANRRRTD PVVVLSSILE IIHNELRSMP DVSPFLFPVS AKKVPDYYRV VTKPMDLQTM 120
121 REYIRQRRYT SREMFLEDLK QIVDNSLIYN GPQSAYTLAA QRMFSSCFEL LAEREDKLMR 180
181 LEKAINPLLD DDDQVALSFI FDKLHSQIKQ LPESWPFLKP VNKKQVKDYY TVIKRPMDLE 240
241 TIGKNIEAHR YHSRAEYLAD IELIATNCEQ YNGSDTRYTK FSKKILEYAQ TQLIEFSEHC 300
301 GQLENNIAKT QERARENAPE FDEA
|
| Detection Method: | |
| Confidence: | 49.045757 |
| Match: | 1eqfA |
| Description: | TAFII250 double bromodomain module |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1725-1814] |
1 11 21 31 41 51
| | | | | |
1 WGNDDYNFDR GSRASSPGDD YIDVEGHGGH ASSSNSIHRS MGAEAGSSHT APAVRKPAPP 60
61 GPGEVKRGRG RPRKQRDPVE EVKSQNPVKR
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1815-2016] |
1 11 21 31 41 51
| | | | | |
1 GRGRPRKDSL ASNMSHTQAY FLDEDLQCST DDEDDDEEED FQEVSEDENN AASILDQGER 60
61 INAPADAMDG MFDPKNIKTE IDLEAHQMAE EPIGEDDSQQ VAEAMVQLSG VGGYYAQQQQ 120
121 DESMDVDPNY DPSDFLAMHK QRQSLGEPSS LQGAFTNFLS HEQDDNGPYN PAEASTSAAS 180
181 GADLGMDASM AMQMAPEMPV NT
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [2017-2129] |
1 11 21 31 41 51
| | | | | |
1 MNNGMGIDDD LDISESDEED DGSRVRIKKE VFDDGDYALQ HQQMGQAASQ SQIYMVDSSN 60
61 EPTTLDYQQP PQLDFQQVQE MEQLQHQVMP PMQSEQLQQQ QTPQGDNDYA WTF
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
