| Protein: | Rpn12R-PA |
| Organism: | Drosophila melanogaster |
| Length: | 262 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Rpn12R-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
276.0 | [0..2] | [262..95] |
|
|
274.0 | [0..2] | [262..93] |
|
|
270.0 | [0..2] | [262..31] |
|
|
269.0 | [0..2] | [262..22] |
|
Region A: Residues: [1-262] |
1 11 21 31 41 51
| | | | | |
1 MSNLYTELKN EWSKHAPNLT HCSRLLDGFK LELVRSNFGT IQTASSSKQK DQLIKSREML 60
61 EIAVEHSITI KDYAAFERYM AQLNTYYYDY DKYLESSKHM YKFMGLNLLY MLATNRLADF 120
121 HIELERLPTA LLLHDSFIQP VLALENYYME GRYNKILQAK KSMPSEIYSN FMDILVNTAR 180
181 EEIASCMEKS YLKMAPKLAA QRLGLRPGSK ELFELATKRQ WCLDEEGNYD YAGLHTRPME 240
241 KVPAKDIATH NLTYAQELEK IV
|
| Detection Method: |  |
| Confidence: | 1.56 |
| Match: | 1rz4A |
| Description: | Crystal Structure of Human eIF3k |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.76236644111948 | bayes_pls_golite062009 |
| hydrolase activity | 2.62777210765927 | bayes_pls_golite062009 |
| protein binding | 1.5114863464349 | bayes_pls_golite062009 |
| structural constituent of ribosome | 1.48815906385664 | bayes_pls_golite062009 |
| nucleic acid binding | 1.08079130332447 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.06350696248374 | bayes_pls_golite062009 |
| transcription repressor activity | 0.700922242779288 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.37240198519167 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.224432853777564 | bayes_pls_golite062009 |
| DNA binding | 0.180353635969032 | bayes_pls_golite062009 |
| transcription regulator activity | 0.147335771550418 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 0.142921675412538 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 0.124542865343065 | bayes_pls_golite062009 |
