YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: dnc-PD
Organism: Drosophila melanogaster
Length: 1068 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for dnc-PD.

Description E-value Query
Range
Subject
Range
dnc-PI, dnc-PJ - The gene dunce is referred to in FlyBase by the symbol Dmel\dnc (CG32498, FBgn0000479). It is a prot...
899.0 [0..1] [1068..1]

Back

Predicted Domain #1
Region A:
Residues: [1-173]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQESNGGPA AGGGAAAAPP PPPQYIITTP SEVDPDEVRS MADLELGSPE KQVQVQSQKF  60
   61 SSTSSTTKVA THSFSMSSSA GTTGQQSKQD SAQQIQQLQQ LQQLQQLQQQ QQQQQSQRII 120
  121 SSSTRSQSLQ SSTIVGEATT ITSGAAQILS ASAAASLAQQ LKAQSSTSII TSS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [174-293]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EQRTSTSTSS SSSTRYIASG SSNLAGGNSN SASSASSKTR FQSFLQQPEG AHGFLTAHQK  60
   61 HVRQFVRSTS AHSEAAAGVA GARAEKCIRS ASTQIDDASV AGVVESAGNL TDSSATGGSM 120
  121 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [294-572]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QLSMSKLGLQ QSSSILISKS AETIEMKSSS AGMRTQLTLS GGFLAPPGNR KITILSPIHA  60
   61 PPGLHDMLKR AQGRSPLSPR ISFPGSDSDL FGFDVENGQG ARSPLEGGSP SAGLVLQNLP 120
  121 QRRESFLYRS DSDFEMSPKS MSRNSSIASE RFKEQEASIL VDRSHGEDLI VTPFAQILAS 180
  181 LRSVRNNLLS LTNVPASNKR PNQSSSASRS GNPPGAPLSQ GEEAYTRLAT DTIEELDWCL 240
  241 DQLETIQTHR SVSDMASLKF KRMLNKELSH FSESSRSGN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [573-1068]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QISEYICSTF LDKQQEFDLP SLRVEDNPEL VAANAAAGQQ SAGQYARSRS PRGPPMSQIS  60
   61 GVKRPLSHTN SFTGERLPTF GVETPRENEL GTLLGELDTW GIQIFSIGEF SVNRPLTCVA 120
  121 YTIFQSRELL TSLMIPPKTF LNFMSTLEDH YVKDNPFHNS LHAADVTQST NVLLNTPALE 180
  181 GVFTPLEVGG ALFAACIHDV DHPGLTNQFL VNSSSELALM YNDESVLENH HLAVAFKLLQ 240
  241 NQGCDIFCNM QKKQRQTLRK MVIDIVLSTD MSKHMSLLAD LKTMVETKKV AGSGVLLLDN 300
  301 YTDRIQVLEN LVHCADLSNP TKPLPLYKRW VALLMEEFFL QGDKERESGM DISPMCDRHN 360
  361 ATIEKSQVGF IDYIVHPLWE TWADLVHPDA QDILDTLEEN RDYYQSMIPP SPPPSGVDEN 420
  421 PQEDRIRFQV TLEESDQENL AELEEGDESG GESTTTGTTG TTAASALSGA GGGGGGGGGM 480
  481 APRTGGCQNQ PQHGGM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 145.0
Match: 2fm0A
Description: No description for 2fm0A was found.

Predicted functions:

Term Confidence Notes
cyclic-nucleotide phosphodiesterase activity 4.70762025272187 bayes_pls_golite062009
3',5'-cyclic-nucleotide phosphodiesterase activity 4.66767157264894 bayes_pls_golite062009
phosphoric diester hydrolase activity 4.40961779134517 bayes_pls_golite062009
3',5'-cyclic-AMP phosphodiesterase activity 3.68838886134169 bayes_pls_golite062009
3',5'-cyclic-GMP phosphodiesterase activity 2.64567538445993 bayes_pls_golite062009
hydrolase activity, acting on ester bonds 1.26293733853576 bayes_pls_golite062009
hydrolase activity 1.17086565360856 bayes_pls_golite062009
catalytic activity 1.07048165010262 bayes_pls_golite062009
binding 0.994379083280533 bayes_pls_golite062009
phosphoric ester hydrolase activity 0.893957699588543 bayes_pls_golite062009
protein binding 0.162314119157812 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle