YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|151945938
Organism:	Saccharomyces cerevisiae YJM789
Length:	226 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|151945938.

Description	E-value	Query Range	Subject Range
gi\|207342139 - gi\|207342139\|gb\|EDZ69997.1\| YMR233Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|151945938 - gi\|151945938\|gb\|EDN64170.1\| conserved protein [Saccharomyces cerevisiae YJM789] gi\|190408460 - gi\|190408460\|gb\|EDV11725.1\| hypothetical protein SCRG_02128 [Saccharomyces cerevisiae RM11-1a] TRI1 - Non-essential sumoylated protein of unknown function with similarity to components of human SWI/SNF ... TRI1_YEAST - Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRI1 PE=1 SV=1	6.0E-57	[1..226]	[1..226]
SMRD1_MOUSE, SCD... - SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 OS=Mus...	1.0E-53	[47..222]	[206..398]
gi\|114644841, gi... - gi\|114644841\|ref\|XP_001155587.1\| PREDICTED: SWI/SNF-related matrix-associated actin-dependent regula... gi\|4566530 - gi\|4566530\|gb\|AAD23390.1\|AF109733_1 SWI/SNF-related, matrix-associated, actin-dependent regulator of... gi\|109096590 - gi\|109096590\|ref\|XP_001110916.1\| PREDICTED: similar to SWI/SNF-related matrix-associated actin-depen... tr\|G3HX65\|G3HX65... - SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 OS=Cri...	3.0E-52	[47..222]	[147..339]
gi\|195566518, gi... - gi\|195566518\|ref\|XP_002106827.1\| GD15903 [Drosophila simulans], gi\|194204219\|gb\|EDX17795.1\| GD15903 ... Bap60-PA - The gene Brahma associated protein 60kD is referred to in FlyBase by the symbol Dmel\Bap60 (CG4303, ...	2.0E-50	[41..223]	[201..402]
SMRD2_RAT - SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 OS=Rat...	1.0E-48	[50..222]	[230..417]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	1.0E-48	[50..222]	[230..417]
gi\|25405318, gi\|... - gi\|5430749\|gb\|AAD43149.1\|AC007504_4 Hypothetical Protein [Arabidopsis thaliana], pir\|\|A96532 hypothe...	6.0E-48	[1..219]	[1..202]

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Predicted Domain #1

Region A:
Residues: [1-84]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADINKYIPM VDAILSVSNP DEISPKRVRK ALQILYSVNL DSQRKLINEL ILERFGDIQE  60
   61 NPRVLIPKND LISRDQELSL RLQK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted functions:

Term	Confidence	Notes
binding	2.63842828741542	bayes_pls_golite062009
transcription regulator activity	2.62775554429027	bayes_pls_golite062009
RNA polymerase II transcription factor activity	0.953438255689584	bayes_pls_golite062009
histone binding	0.948950535074526	bayes_pls_golite062009
protein binding	0.529408559970229	bayes_pls_golite062009
specific RNA polymerase II transcription factor activity	0.439630834571696	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [85-226]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EEERPLRSTR KRKGKSESKS KRKKKKNDSP DSNSISVRKV LLSAPLQKFL GSEELPRTQV  60
   61 VKMIWQYIKE HDLQNPKDRR EILCDEKMEP IFGKKMTMFS MNKLLTKHLF NPDEIVKHEE 120
  121 EQKQTPEKEI KLENESLPNL SG

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	51.017729
Match:	PF02201
Description:	SWIB/MDM2 domain

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	4.01592136607858	bayes_pls_golite062009
binding	3.20303599400601	bayes_pls_golite062009
basal transcription repressor activity	2.69162769894095	bayes_pls_golite062009
transcription coactivator activity	2.58234407051051	bayes_pls_golite062009
transcription repressor activity	1.98538788872171	bayes_pls_golite062009
transcription activator activity	1.83085389017135	bayes_pls_golite062009
transcription factor binding	1.73032563380905	bayes_pls_golite062009
transcription cofactor activity	1.60414428986898	bayes_pls_golite062009
general RNA polymerase II transcription factor activity	1.51390743508971	bayes_pls_golite062009
protein binding	1.38134467541454	bayes_pls_golite062009
ligase activity	0.802664465339603	bayes_pls_golite062009
structural molecule activity	0.66106995897056	bayes_pls_golite062009
RNA polymerase II transcription factor activity	0.15313128037113	bayes_pls_golite062009
catalytic activity	0.121624777548864	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions:

Predicted functions: