YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|151945941
Organism: Saccharomyces cerevisiae YJM789
Length: 157 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|151945941.

Description E-value Query
Range		 Subject
Range
TAF9_YEAST - Transcription initiation factor TFIID subunit 9 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S2...
gi|151945941 - gi|151945941|gb|EDN64173.1| TFIID subunit [Saccharomyces cerevisiae YJM789]
TAF9 - Subunit (17 kDa) of TFIID and SAGA complexes, involved in RNA polymerase II transcription initiation...
gi|190408463 - gi|190408463|gb|EDV11728.1| transcription initiation factor TFIID subunit 9 [Saccharomyces cerevisia...
 6.0E-64 [1..157] [1..157]
gi|13097291 - gi|13097291|gb|AAH03400.1| TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor,...
 2.0E-57 [19..156] [2..134]
TAF9_MOUSE - Transcription initiation factor TFIID subunit 9 OS=Mus musculus GN=Taf9 PE=1 SV=1
 2.0E-57 [19..156] [2..134]
TAF9_RAT - (Q62880) Transcription initiation factor TFIID subunit 9 (Transcription initiation factor TFIID 31 k...
 1.0E-52 [23..156] [1..129]
taf9 - transcription initiation factor Taf9
TAF9_SCHPO - Transcription initiation factor TFIID subunit 9 OS=Schizosaccharomyces pombe (strain 972 / ATCC 2484...
 2.0E-49 [17..149] [1..130]
TAF9_ARATH - Transcription initiation factor TFIID subunit 9 OS=Arabidopsis thaliana GN=TAF9 PE=1 SV=1
 1.0E-44 [25..156] [5..131]
TAF9_ENCCU - Transcription initiation factor TFIID subunit 9 OS=Encephalitozoon cuniculi GN=TAF9 PE=1 SV=1
TAF9_ENCCU - Transcription initiation factor TFIID subunit 9 OS=Encephalitozoon cuniculi (strain GB-M1) GN=TAF9 P...
 1.0E-40 [24..151] [3..125]
taf-9 - status:Confirmed UniProt:O45784 protein_id:CAB03347.1
 3.0E-38 [17..149] [1..133]
gi|1942936 - gi|1942936|pdb|1TAF|A Chain A, Drosophila Tbp Associated Factors Dtafii42DTAFII62 Heterotetramer
 9.0E-25 [30..102] [1..68]

Back

Predicted Domain #1
Region A:
Residues: [1-157] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGGGKNVLN KNSVGSVSEV GPDSTQEETP RDVRLLHLLL ASQSIHQYED QVPLQLMDFA  60
   61 HRYTQGVLKD ALVYNDYAGS GNSAGSGLGV EDIRLAIAAR TQYQFKPTAP KELMLQLAAE 120
  121 RNKKALPQVM GTWGVRLPPE KYCLTAKEWD LEDPKSM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 70.626727
Match: 1tafA_
Description: TAF(II)42
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
general RNA polymerase II transcription factor activity 9.25279783093877 bayes_pls_golite062009
histone acetyltransferase activity 5.97252613675094 bayes_pls_golite062009
lysine N-acetyltransferase activity 5.97252613675094 bayes_pls_golite062009
N-acetyltransferase activity 4.49886535711761 bayes_pls_golite062009
DNA binding 4.49118409263799 bayes_pls_golite062009
nucleic acid binding 4.35201412176948 bayes_pls_golite062009
N-acyltransferase activity 4.22222466548509 bayes_pls_golite062009
transcription regulator activity 4.08606081850613 bayes_pls_golite062009
transcription initiation factor activity 3.96621818094279 bayes_pls_golite062009
acetyltransferase activity 3.91614625961398 bayes_pls_golite062009
acyltransferase activity 3.38611688546892 bayes_pls_golite062009
transferase activity, transferring acyl groups other than amino-acyl groups 3.35015681315177 bayes_pls_golite062009
RNA polymerase II transcription factor activity 3.28941584139552 bayes_pls_golite062009
binding 3.27510691458843 bayes_pls_golite062009
transferase activity, transferring acyl groups 3.1782337747057 bayes_pls_golite062009
transcription factor activity 2.51581622888695 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 1.82448881874976 bayes_pls_golite062009
transcription activator activity 1.25487495162413 bayes_pls_golite062009
transcription factor binding 1.15204005455906 bayes_pls_golite062009
transcription coactivator activity 1.1297723528047 bayes_pls_golite062009
nucleotidyltransferase activity 1.10331930589736 bayes_pls_golite062009
protein binding 1.07873333188144 bayes_pls_golite062009
transcription cofactor activity 1.01502031330902 bayes_pls_golite062009
transcription repressor activity 0.72554769377984 bayes_pls_golite062009
histone binding 0.218942897869955 bayes_pls_golite062009
sequence-specific DNA binding 0.0852726470007639 bayes_pls_golite062009
transcription corepressor activity 0.0736756545988504 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle