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View Structure Prediction Details

Protein: nhr-41
Organism: Caenorhabditis elegans
Length: 657 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nhr-41.

Description E-value Query
Range		 Subject
Range
gi|5702091 - gi|5702091|gb|AAD47137.1|AF061181_1 green fluorescent protein-estrogen receptor alpha fusion [Mammal...
 375.0 [0..16] [657..288]

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Predicted Domain #1
Region A:
Residues: [1-185] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYTLPKCSDH PHRPLILENS TSSTGLIFAE SQASASHQTW INMTLGDPCS VEQPPPPPID  60
   61 FSRSLIAPTA IKQESHLIPS TPGTPTAFQP PQHANTPIPG IQPNLFNPAI MAAQLNVFSN 120
  121 PQLMAMMQAT RNPLLGHPSV VGPPMMPNII QQLNALRNVQ LSNANTMANL QNMSSSPKHT 180
  181 NGSSE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [186-276] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RSENCGELCV VCGDKASGRH YGAVSCEGCK GFFKRSIRKR IGYVCRSQKD CPVTKFHRNR  60
   61 CQYCRLRKCL SMGMRSESVQ AERRPVNNSS M

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 29.09691
Match: 2a66A
Description: Human Liver Receptor Homologue DNA-Binding Domain (hLRH-1 DBD) in Complex with dsDNA from the hCYP7A1 Promoter
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [277-577] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LCNNDNNQQN TTPEHLSPNL LLSLVKLEHE TKLGGLEALI KPGSPVMLQN TQDYMDVKRE  60
   61 SIGEDEMTVI GLVPPSASPT SSGVGSSSSI SDDSGPIYTS ERARFEISVP LNTQNPRNHQ 120
  121 YISEITTRLL FLTVHFVKDS RVSLRTSTME GLLKSKWCDL YILALMQTAD KIKLGQLLDN 180
  181 LTNQMAMGME CGQYSAEKFE KISEQMQRLL QLSQLFASRE LTAVEYAYLK MISFTAQDLP 240
  241 SSMASPETRS VNQMASQELF EYVSSSKSTQ NHMSNEHINV DDSTSEDNDT HVTSQQSSVN 300
  301 I

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 38.39794
Match: 1bsxA
Description: Thyroid hormone receptor beta (TR-beta)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
transcription regulator activity 5.53061626347066 bayes_pls_golite062009
DNA binding 4.92165988569962 bayes_pls_golite062009
nucleic acid binding 4.78024150262074 bayes_pls_golite062009
transcription activator activity 4.53302455129434 bayes_pls_golite062009
sequence-specific DNA binding 4.11614358606713 bayes_pls_golite062009
transcription factor activity 4.0914094580319 bayes_pls_golite062009
ligand-dependent nuclear receptor activity 3.89763470197726 bayes_pls_golite062009
binding 3.85318710398432 bayes_pls_golite062009
protein binding 3.21524787168952 bayes_pls_golite062009
transcription factor binding 2.68044489404568 bayes_pls_golite062009
RNA polymerase II transcription factor activity 2.38308182853979 bayes_pls_golite062009
steroid hormone receptor activity 2.30195937604451 bayes_pls_golite062009
transcription repressor activity 2.20686235000733 bayes_pls_golite062009
receptor activity 2.07573173722434 bayes_pls_golite062009
transcription cofactor activity 1.73827483890179 bayes_pls_golite062009
nuclear hormone receptor binding 1.60419100774741 bayes_pls_golite062009
specific RNA polymerase II transcription factor activity 1.34794228300778 bayes_pls_golite062009
retinoic acid receptor binding 1.28118886948947 bayes_pls_golite062009
transcription coactivator activity 1.23834725221597 bayes_pls_golite062009
molecular transducer activity 1.19872119297817 bayes_pls_golite062009
signal transducer activity 1.19872119297817 bayes_pls_golite062009
retinoid X receptor binding 0.99801784942981 bayes_pls_golite062009
retinoic acid receptor activity 0.853869057774515 bayes_pls_golite062009
protein dimerization activity 0.797229273848179 bayes_pls_golite062009
hormone receptor binding 0.74373733735458 bayes_pls_golite062009
promoter binding 0.58091332905515 bayes_pls_golite062009
protein N-terminus binding 0.57701453824007 bayes_pls_golite062009
thyroid hormone receptor activity 0.49784404390361 bayes_pls_golite062009
protein heterodimerization activity 0.45265806678057 bayes_pls_golite062009
receptor binding 0.418843034756825 bayes_pls_golite062009
ligand-regulated transcription factor activity 0.202197503742221 bayes_pls_golite062009
lipid binding 0.164046651023989 bayes_pls_golite062009
RNA polymerase II transcription factor activity, enhancer binding 0.15737167800277 bayes_pls_golite062009
catalytic activity 0.106902059021677 bayes_pls_golite062009

Predicted Domain #4
Region A:
Residues: [578-657] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AAERFSRILQ LLPCLRWFDP ATIVEIFFSG LIGPMSIETI IPFVLQMNLM SFFDQKMELG  60
   61 SGGASDTLST SSLSEMMNNQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 56.69897
Match: 1yy4A
Description: Crystal structure of estrogen receptor beta complexed with 1-chloro-6-(4-hydroxy-phenyl)-naphthalen-2-ol
Matching Structure (courtesy of the PDB):
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle