| Protein: | PMS1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 873 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PMS1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..873] | [1..873] |
|
|
0.0 | [4..861] | [32..873] |
|
Region A: Residues: [1-403] |
1 11 21 31 41 51
| | | | | |
1 MTQIHQINDI DVHRITSGQV ITDLTTAVKE LVDNSIDANA NQIEIIFKDY GLESIECSDN 60
61 GDGIDPSNYE FLALKHYTSK IAKFQDVAKV QTLGFRGEAL SSLCGIAKLS VITTTSPPKA 120
121 DKLEYDMVGH ITSKTTTSRN KGTTVLVSQL FHNLPVRQKE FSKTFKRQFT KCLTVIQGYA 180
181 IINAAIKFSV WNITPKGKKN LILSTMRNSS MRKNISSVFG AGGMRGLEEV DLVLDLNPFK 240
241 NRMLGKYTDD PDFLDLDYKI RVKGYISQNS FGCGRNSKDR QFIYVNKRPV EYSTLLKCCN 300
301 EVYKTFNNVQ FPAVFLNLEL PMSLIDVNVT PDKRVILLHN ERAVIDIFKT TLSDYYNRQE 360
361 LALPKRMCSQ SEQQAQKRLK TEVFDDRSTT HESDNENYHT ARS
|
| Detection Method: |  |
| Confidence: | 68.39794 |
| Match: | 1ea6A_ |
| Description: | DNA mismatch repair protein PMS2 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| mismatched DNA binding | 8.69038541722775 | bayes_pls_golite062009 |
| DNA insertion or deletion binding | 7.03361327424191 | bayes_pls_golite062009 |
| 6.04882684441736 | bayes_pls_golite062009 | |
| guanine/thymine mispair binding | 5.8954303695758 | bayes_pls_golite062009 |
| mismatch repair complex binding | 5.63566878749852 | bayes_pls_golite062009 |
| single base insertion or deletion binding | 5.36719395837475 | bayes_pls_golite062009 |
| dinucleotide insertion or deletion binding | 4.91072939712457 | bayes_pls_golite062009 |
| loop DNA binding | 4.26052361441101 | bayes_pls_golite062009 |
| DNA topoisomerase (ATP-hydrolyzing) activity | 2.66323092512867 | bayes_pls_golite062009 |
| DNA topoisomerase activity | 2.35776058207527 | bayes_pls_golite062009 |
| protein kinase activity | 2.13536672517084 | bayes_pls_golite062009 |
| catalytic activity | 2.10890475146569 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 1.77725015786603 | bayes_pls_golite062009 |
| kinase activity | 1.68443268281997 | bayes_pls_golite062009 |
| phosphotransferase activity, alcohol group as acceptor | 1.64025200399404 | bayes_pls_golite062009 |
| transcription regulator activity | 1.37978051130887 | bayes_pls_golite062009 |
| DNA binding | 1.31521246060081 | bayes_pls_golite062009 |
| structure-specific DNA binding | 1.22640171545155 | bayes_pls_golite062009 |
| nucleic acid binding | 1.22084067619837 | bayes_pls_golite062009 |
| transferase activity | 1.09369139087478 | bayes_pls_golite062009 |
| exonuclease activity | 1.02947145936572 | bayes_pls_golite062009 |
| molecular transducer activity | 0.996368427522977 | bayes_pls_golite062009 |
| signal transducer activity | 0.996368427522977 | bayes_pls_golite062009 |
| double-stranded DNA binding | 0.91402301750067 | bayes_pls_golite062009 |
| binding | 0.908938377164829 | bayes_pls_golite062009 |
| exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | 0.86218415868631 | bayes_pls_golite062009 |
| MutSalpha complex binding | 0.8423412194292 | bayes_pls_golite062009 |
| single-stranded DNA binding | 0.839521076707668 | bayes_pls_golite062009 |
| ribonuclease activity | 0.75307991342421 | bayes_pls_golite062009 |
| structural constituent of ribosome | 0.71251019785001 | bayes_pls_golite062009 |
| nuclease activity | 0.69721312877891 | bayes_pls_golite062009 |
| 3'-5'-exoribonuclease activity | 0.48105441429954 | bayes_pls_golite062009 |
| 3'-5' exonuclease activity | 0.477960254167 | bayes_pls_golite062009 |
| structural molecule activity | 0.41673693977319 | bayes_pls_golite062009 |
| exoribonuclease activity, producing 5'-phosphomonoesters | 0.36703663415044 | bayes_pls_golite062009 |
| exoribonuclease activity | 0.350394896843651 | bayes_pls_golite062009 |
|
Region A: Residues: [404-590] |
1 11 21 31 41 51
| | | | | |
1 ESNQSNHAHF NSTTGVIDKS NGTELTSVMD GNYTNVTDVI GSECEVSVDS SVVLDEGNSS 60
61 TPTKKLPSIK TDSQNLSDLN LNNFSNPEFQ NITSPDKARS LEKVVEEPVY FDIDGEKFQE 120
121 KAVLSQADGL VFVDNECHEH TNDCCHQERR GSTDTEQDDE ADSIYAEIEP VEINVRTPLK 180
181 NSRKSIS
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [591-733] |
1 11 21 31 41 51
| | | | | |
1 KDNYRSLSDG LTHRKFEDEI LEYNLSTKNF KEISKNGKQM SSIISKRKSE AQENIIKNKD 60
61 ELEDFEQGEK YLTLTVSKND FKKMEVVGQF NLGFIIVTRK VDNKYDLFIV DQHASDEKYN 120
121 FETLQAVTVF KSQKLIIPQP VEL
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [734-826] |
1 11 21 31 41 51
| | | | | |
1 SVIDELVVLD NLPVFEKNGF KLKIDEEEEF GSRVKLLSLP TSKQTLFDLG DFNELIHLIK 60
61 EDGGLRRDNI RCSKIRSMFA MRACRSSIMI GKP
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [827-873] |
1 11 21 31 41 51
| | | | | |
1 LNKKTMTRVV HNLSELDKPW NCPHGRPTMR HLMELRDWSS FSKDYEI
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
