| Protein: | gi|39545896, gi|... |
| Organism: | Arabidopsis thaliana |
| Length: | 261 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39545896, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
299.0 | [0..4] | [253..13] |
|
Region A: Residues: [1-122] |
1 11 21 31 41 51
| | | | | |
1 MEDIHNLDIE KSDRSIWLMK CPVVVDKAWH KIAASSSSSF ASSDSPPDMA KIVREVDPLR 60
61 DDSPPEFKMY MVGAEYGNMP KCYALNMFTD FVPMGGFSDV NQGCAAAEGK VDHKFDMKPY 120
121 GE
|
| Detection Method: |  |
| Confidence: | 26.30103 |
| Match: | 1f3uA |
| Description: | TFIIF beta subunit, Rap30 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| general RNA polymerase II transcription factor activity | 10.2797850053222 | bayes_pls_golite062009 |
| transcription initiation factor activity | 6.22439849848084 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 4.06672086326535 | bayes_pls_golite062009 |
| transcription regulator activity | 3.89911747857156 | bayes_pls_golite062009 |
| binding | 2.6963272883422 | bayes_pls_golite062009 |
| transcription coactivator activity | 1.30173573105398 | bayes_pls_golite062009 |
| protein binding | 1.06175937412568 | bayes_pls_golite062009 |
| transcription activator activity | 0.800371882273381 | bayes_pls_golite062009 |
| transcription factor binding | 0.677361513203971 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.43974291826617 | bayes_pls_golite062009 |
| catalytic activity | 0.304516551414824 | bayes_pls_golite062009 |
|
Region A: Residues: [123-261] |
1 11 21 31 41 51
| | | | | |
1 TIEEYARLCR ERTSKAMVKN RQIQVIDNDR GVHMRPMPGM LGLVSSNSKE KRKPPPVKQT 60
61 EVKRTRRDRG ELEAIMFKLF EGQPNWTLKQ LVQETDQPAQ FLKEILNELC VYNKRGSNQG 120
121 TYELKPEYKK SAEDDTGGQ
|
| Detection Method: | |
| Confidence: | 28.0 |
| Match: | 1bbyA |
| Description: | DNA-BINDING DOMAIN FROM HUMAN RAP30, NMR, MINIMIZED AVERAGE |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| general RNA polymerase II transcription factor activity | 5.67074370996647 | bayes_pls_golite062009 |
| transcription regulator activity | 5.55329976718261 | bayes_pls_golite062009 |
| DNA binding | 4.84466441605416 | bayes_pls_golite062009 |
| nucleic acid binding | 4.57954522145536 | bayes_pls_golite062009 |
| transcription factor activity | 4.12685284895733 | bayes_pls_golite062009 |
| binding | 4.05190810999633 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.60738445921725 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.3918869755162 | bayes_pls_golite062009 |
| transcription activator activity | 2.37668609508629 | bayes_pls_golite062009 |
| transcription repressor activity | 2.22485867684613 | bayes_pls_golite062009 |
| DNA-directed RNA polymerase activity | 1.82365519759474 | bayes_pls_golite062009 |
| RNA polymerase activity | 1.82365519759474 | bayes_pls_golite062009 |
| transcription elongation regulator activity | 1.81270943531115 | bayes_pls_golite062009 |
| RNA binding | 0.992043085614693 | bayes_pls_golite062009 |
| protein binding | 0.961087148890615 | bayes_pls_golite062009 |
| transcription factor binding | 0.85714789329232 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.66743181561551 | bayes_pls_golite062009 |
| nucleotidyltransferase activity | 0.237727660028553 | bayes_pls_golite062009 |
| positive transcription elongation factor activity | 0.13524243942225 | bayes_pls_golite062009 |
| structural molecule activity | 0.111941063082739 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity, enhancer binding | 0.0360186926687502 | bayes_pls_golite062009 |
