| Protein: | NCBP2_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 257 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NCBP2_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
177.0 | [0..13] | [256..78] |
|
Region A: Residues: [1-183] |
1 11 21 31 41 51
| | | | | |
1 MASLFKEQAK LSAYRDRRFS GTQEEFDEAL RASTTVYIGN VSFYTTEEQL YELFSRAGEI 60
61 KKIIMGLDKN TKTPCGFCFV LFYSREDTED AVKYISGTIL DDRPIRVDFD WGFQEGRQWG 120
121 RGRSGGQVRD EYRTDYDPAR GGYGKLVQKE LEAQRQLVDY GTGSLGAYPQ AAPTNYGNGR 180
181 RGG
|
| Detection Method: |  |
| Confidence: | 23.30103 |
| Match: | 1h2tZ |
| Description: | CBP20, 20KDa nuclear cap-binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 6.73097473547076 | bayes_pls_golite062009 |
| 6.62953239642182 | bayes_pls_golite062009 | |
| RNA cap binding | 5.43390507836051 | bayes_pls_golite062009 |
| mRNA binding | 5.29759606920196 | bayes_pls_golite062009 |
| nucleic acid binding | 3.81920018903278 | bayes_pls_golite062009 |
| binding | 3.64400841800969 | bayes_pls_golite062009 |
| snRNA binding | 3.28448936696877 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 3.11990160533699 | bayes_pls_golite062009 |
| single-stranded RNA binding | 2.93798024346416 | bayes_pls_golite062009 |
| U1 snRNA binding | 2.26303528058407 | bayes_pls_golite062009 |
| structural molecule activity | 1.29928829870122 | bayes_pls_golite062009 |
| protein binding | 1.12215421354121 | bayes_pls_golite062009 |
| transcription regulator activity | 1.07788694919471 | bayes_pls_golite062009 |
| DNA binding | 0.978604858165557 | bayes_pls_golite062009 |
| transporter activity | 0.628672636801176 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.591700155096213 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.553211624437706 | bayes_pls_golite062009 |
| transmembrane transporter activity | 0.505106991526286 | bayes_pls_golite062009 |
| microtubule binding | 0.25098314182074 | bayes_pls_golite062009 |
| tubulin binding | 0.249728567320773 | bayes_pls_golite062009 |
| transcription factor activity | 0.234742017105535 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.182749906784328 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.096231856558874 | bayes_pls_golite062009 |
| pyrophosphatase activity | 0.059732432409948 | bayes_pls_golite062009 |
| snoRNA binding | 0.0568636182001701 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides | 0.0510390778764699 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 0.0484248928275733 | bayes_pls_golite062009 |
|
Region A: Residues: [184-257] |
1 11 21 31 41 51
| | | | | |
1 GNYGQGGQNR HGRGDYHRKR QRDDDRYGRD NSRRNTDHES RRDTDSDMRP EKNPRFRESG 60
61 DSDDDGEDDR KRRS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
